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Report for CCDS36053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36053.1 Public Mus musculus 10 Pawr 23 108 98 CCDS HistoryNCBI Gene:114774Re-query CCDS DB by CCDS ID:36053.1Re-query CCDS DB by GeneID:114774See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095313.4 ENSMUSP00000092951.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095313.4Link to Ensembl Protein Viewer:ENSMUSP00000092951.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095313Re-query CCDS DB by Protein ID:ENSMUSP00000092951
Original member Current member NCBI NM_054056.2 NP_473397.1 Accepted alive Link to Nucleotide Sequence:NM_054056.2Link to Protein Sequence:NP_473397.1Re-query CCDS DB by Nucleotide ID:NM_054056Re-query CCDS DB by Protein ID:NP_473397Link to BLAST:NP_473397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473397.1 333 Q925B0-1 333 100% 0 0

Chromosomal Locations for CCDS 36053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 108332817 108333311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108382730 108382861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108391698 108391732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108409463 108409610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108411964 108412068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108413668 108413754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCGACCGGCGGCTACCGGAGCGGCGGCAGCACCACCACGGACTTCCTGGAGGAGTGGAAGGCGAAGC
GCGAGAAGATGCGCGCCAAGCAGAACCCCGCGGGCCCGGGGTCGAGCGGCGGGGATCCAGCCGCCAAGTC
CCCCGCGGGATCGCTGACCCCGACCGCGGTCGCGGGAACCTCGGAGCTCAACCACGGCCCCGCGGGCGCG
GCCGCACCTGCCGCCCCCGCGCCCGGCGCCCTGAACTGCGCTCACGGCTCGTCCACGCTGCCCCGCGCGG
CTCCCGGCTCCCGGCGGGCGGAGGACGAGTGCCCTAGCGCCGCTGCGGCCTCGGGAGCGCCTGGGTCCCG
GGGCGATGAGGAGGAGCCGGATAGCGCCCGGGAGAAGGGCCGCAGCTCGGGACCCAGCGCCAGGAAAGGC
AAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGCCGCTCCACCGGCGTGGTCAACATCCCCGCGG
CGGAGTGCTTAGATGAGTACGAAGATGATGAAGCAGGACAGAAGGAACGGAAGCGAGAGGATGCCATCAC
CCAGCAAAACACCATCCAGAATGAAGCTGCGACCCTCCCAGATCCAGGCACATCCTACCTGCCCCAGGAC
CCGTCGAGAACAGTTCCAGGCAGATACAAAAGCACAACCAGTGCCCCAGAAGATGAAATCTCAAATAGAT
ATCCCCGAACAGACAGAAGTGGTTTCAGTAGACACAACAGAGATGCAAATGCGCCGGCTAGTTTCTCCTC
AAGTAGCACCTTGGAAAAGAGAATTGAAGATCTTGAAAAGGAAGTTGTAAGAGAAAGGCAAGAAAACCTT
CGACTTGTGAGGCTGATGCAAGATAAAGAAGAAATGATTGGGAAACTCAAGGAAGAGATCGATTTGTTAA
ATAGAGACCTAGATGACATGGAAGATGAGAACGAGCAACTAAAACAGGAAAATAAAACTCTTTTGAAGGT
TGTTGGGCAGCTGACAAGGTAG

Translation (333 aa):
MATGGYRSGGSTTTDFLEEWKAKREKMRAKQNPAGPGSSGGDPAAKSPAGSLTPTAVAGTSELNHGPAGA
AAPAAPAPGALNCAHGSSTLPRAAPGSRRAEDECPSAAAASGAPGSRGDEEEPDSAREKGRSSGPSARKG
KGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQNTIQNEAATLPDPGTSYLPQD
PSRTVPGRYKSTTSAPEDEISNRYPRTDRSGFSRHNRDANAPASFSSSSTLEKRIEDLEKEVVRERQENL
RLVRLMQDKEEMIGKLKEEIDLLNRDLDDMEDENEQLKQENKTLLKVVGQLTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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