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Report for CCDS36101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36101.1 Public Mus musculus 11 Gas2l1 23 108 98 CCDS HistoryNCBI Gene:78926Re-query CCDS DB by CCDS ID:36101.1Re-query CCDS DB by GeneID:78926See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056649.12 ENSMUSP00000050275.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056649.12Link to Ensembl Protein Viewer:ENSMUSP00000050275.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056649Re-query CCDS DB by Protein ID:ENSMUSP00000050275
Original member Current member EBI ENSMUST00000109895.1 ENSMUSP00000105521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109895.1Link to Ensembl Protein Viewer:ENSMUSP00000105521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109895Re-query CCDS DB by Protein ID:ENSMUSP00000105521
Original member Current member NCBI NM_001190408.1 NP_001177337.1 Accepted alive Link to Nucleotide Sequence:NM_001190408.1Link to Protein Sequence:NP_001177337.1Re-query CCDS DB by Nucleotide ID:NM_001190408Re-query CCDS DB by Protein ID:NP_001177337Link to BLAST:NP_001177337.1
Original member Current member NCBI NM_144560.3 NP_653146.1 Accepted alive Link to Nucleotide Sequence:NM_144560.3Link to Protein Sequence:NP_653146.1Re-query CCDS DB by Nucleotide ID:NM_144560Re-query CCDS DB by Protein ID:NP_653146Link to BLAST:NP_653146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177337.1 678 Q8JZP9-1 678 100% 0 0
NP_653146.1 678 Q8JZP9-1 678 100% 0 0

Chromosomal Locations for CCDS 36101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5060791 5061817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5062155 5062326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5062415 5062511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5062594 5062701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5063826 5064458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGCGAACCCAGTGGCGGGCATCGCAGGCTCTGCCGCCAAGAGTGTGCGACCCTTCCGATCCAGTGAGG
CCTATGTGGAAGCCATGAAGGAAGACCTGGCCGATTGGCTCAATGCTTTGTACAGTCTAGGTCTCCCCGG
CAGTGGCGATGGCTTCCTCACGGGGCTGGCCACAGGCACAACCCTGTGCCAACATGCCAACGCTGTCACC
GAGGCTGCCCGGGCTCTGGCTGCTGCCCGTCCAACCCGAGGTGTGGCCTTCCAGGCACACAGTGTGGCGC
CTGGCTCCTTCATGGCCCGAGACAACGTGGCCTCTTTCATCGGCTGGTGCCGGGCTGAGCTGGGCGTGCC
TGAAGTGCTCATGTTTGAGACAGAGGACCTGGTGCTACGCAAGAACGAGAAGAGTGTGGTGCTCTGCCTG
CTGGAGGTCGCCCGGCGTGGGGCGCGCCTTGGCCTGCTTGCCCCGAGGCTGGTACAGTTCGAGCAGGAGA
TCGAGCGGGAGCTTCGAGCTACCCCTCAGGTTTCCAGCGTCCCTGCTGCTGAAGAGGATGTCACTGAAAT
TGCCACTGTACCAGGGGTTCCCACCCGCACACCCCGCATGACGCCCAATGACCTTCGAAACCTTGATGAG
CTGGTAAGGGAGATCCTAGGCAGGTGCACCTGCCCCGACCAGTTTCCCATGATCAAGGTCTCCGAGGGGA
AGTACCGAGTGGGAGACTCCAGCTTGCTCATCTTCGTGAGGGTGCTGAGGAGTCACGTGATGGTGCGAGT
GGGGGGCGGCTGGGACACACTGGAGCACTACCTAGACAAGCATGACCCTTGTCGCTGCTCGTCTTCTACG
CACCGTCTGCCCCAGCAGAGGACCGGGACTTTCTCCCCGCAGAGGGGATCACCCACTCCTAGCCCCCGCC
CCGGTAGCCCAGTCCCTGGGAGTGAGCGCAGGAGCTCCCGGCCCGAAGTAACCCCCATCAGCCTGCGAGG
CACAAAGGAGGGGCCTGAGACCCCGCTCAGGCCCCGCGATCAGCTGCCCCCCCTTCCCCGCTCCCGCCGC
TACTCTGGGGACAGTGACTCCTCAGCCTCCTCTGCTCAGAGCGGCCCCATGGGTGCCCGCAGCGACGATT
CAGCCACTGGCTCCCGGAGGGAGCGGCCCAGCCACCGGCCGACCTCCTGTCTTCCGGCCTCCCCGAGACG
GCCGACCGCGCCTCGCAGCCAGTCTCGAGACCGGCTGGACCGGGGACGGCCCCGCGTGGCCCCAGGAGGC
CGAGGCGCTCAGCTGTCGACCTCCAGCCCAGCAAGGCGCACCCGCAGCCAGAGCCGCGAGGAACAGGCGG
TACTGATGGTGCGCAGGGACCGAGACGGCCAGCACTCGTGGGTGGCCCGGGGCAGGGGTGGCGGGGGATC
AGGAGGTTCTGGGAGGAGTACCCCGCAGACTCCGCGTGCCCTCAGCCCTGCAGCACCCCGGCCTTCCAGG
GGCCCCAGCCCCGGCCCAGAGCTGGCTGCCACACCTGCCAGCATCTTCCGCACGCCCCTGCAGCTTGACC
CACAGCAGGAGCAGCAGCTGTTCAGGCGCCTGGAAGAGGAATTCTTAGCCAATGCCCGCGCCTTGGAGGC
TGCTGCCAGCCATACCCCCATGGGATCTGCCCCTGACCCTCCAGCTCCGGACTCTGCTTACTGTTCATCC
AGCTCCTCGTCTTCATCACTCAGTGTCCTGGGTGGCAAATGTGGCCAACCTGGGGAGTCAGGCCGCACAG
CCAATGGGCTGCCTGGGCCCCGCAGCCAAGCTCTGTCCAGTTCTTCCGATGAGGGCAGCCCCTACCTTGC
TGTAGGAGGGGCACTGGATGCAACCAGGAGCTCTTTGGCTGGCCCAGAACCCTCACTGACCTGGGCAAGG
GGGCGGATGGACACACAACCAGACCGTAAACCCTCACGCATACCGACACCTCGGGGACCCCGCCGCCCAT
CGGGACCCATAGAACTCGGGGCTTGGCATGCCCAGCATTCGGTCACCCCAAGGACCGAGCCAGATTCTTC
GATGTGA

Translation (678 aa):
MANPVAGIAGSAAKSVRPFRSSEAYVEAMKEDLADWLNALYSLGLPGSGDGFLTGLATGTTLCQHANAVT
EAARALAAARPTRGVAFQAHSVAPGSFMARDNVASFIGWCRAELGVPEVLMFETEDLVLRKNEKSVVLCL
LEVARRGARLGLLAPRLVQFEQEIERELRATPQVSSVPAAEEDVTEIATVPGVPTRTPRMTPNDLRNLDE
LVREILGRCTCPDQFPMIKVSEGKYRVGDSSLLIFVRVLRSHVMVRVGGGWDTLEHYLDKHDPCRCSSST
HRLPQQRTGTFSPQRGSPTPSPRPGSPVPGSERRSSRPEVTPISLRGTKEGPETPLRPRDQLPPLPRSRR
YSGDSDSSASSAQSGPMGARSDDSATGSRRERPSHRPTSCLPASPRRPTAPRSQSRDRLDRGRPRVAPGG
RGAQLSTSSPARRTRSQSREEQAVLMVRRDRDGQHSWVARGRGGGGSGGSGRSTPQTPRALSPAAPRPSR
GPSPGPELAATPASIFRTPLQLDPQQEQQLFRRLEEEFLANARALEAAASHTPMGSAPDPPAPDSAYCSS
SSSSSSLSVLGGKCGQPGESGRTANGLPGPRSQALSSSSDEGSPYLAVGGALDATRSSLAGPEPSLTWAR
GRMDTQPDRKPSRIPTPRGPRRPSGPIELGAWHAQHSVTPRTEPDSSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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