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Report for CCDS36169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36169.1 Public Mus musculus 11 Wnt9a 23 108 98 CCDS HistoryNCBI Gene:216795Re-query CCDS DB by CCDS ID:36169.1Re-query CCDS DB by GeneID:216795See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108783.3 ENSMUSP00000104411.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108783.3Link to Ensembl Protein Viewer:ENSMUSP00000104411.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108783Re-query CCDS DB by Protein ID:ENSMUSP00000104411
Original member Current member NCBI NM_139298.2 NP_647459.1 Accepted alive Link to Nucleotide Sequence:NM_139298.2Link to Protein Sequence:NP_647459.1Re-query CCDS DB by Nucleotide ID:NM_139298Re-query CCDS DB by Protein ID:NP_647459Link to BLAST:NP_647459.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647459.1 365 Q8R5M2 365 100% 0 0

Chromosomal Locations for CCDS 36169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59306973 59307067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59327564 59327820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59328502 59328764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59330893 59331375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGCTGGATGGGTCCCTTCTGGCGCGCTGGCTGGCCGCGGCCTTCGGGCTGACGCTGCTGCTCGCCGCGC
TGCGCCCTTCGGCCGCCTACTTCGGGCTAACAGGCAGTGAACCCCTGACTATCCTCCCTCTGACCCTGGA
GACCGAGGCTGCGGCCCAAGCACACTACAAGGCCTGCGACAGGCTGAAGCTGGAGCGCAAGCAGCGCCGC
ATGTGCCGCAGGGACCCGGGTGTGGCCGAGACACTGGTGGAGGCCGTAAGCATGAGTGCCCTGGAGTGCC
AGTACCAGTTCCGCTTTGAGCGCTGGAACTGCACCCTGGAGGGCCGCTACCGAGCCAGCCTGCTCAAGCG
AGGCTTCAAGGAGACTGCTTTCCTCTACGCCATCTCTTCTGCCGGCCTGACGCATGCACTGGCCAAGGCC
TGCAGTGCAGGCCGCATGGAGCGCTGCACGTGTGATGAGGCACCCGACCTGGAAAACCGCGAGGCCTGGC
AGTGGGGCGGCTGCGGGGACAACCTCAAGTACAGCAGCAAGTTTGTCAAGGAGTTCCTGGGCCGGCGCTC
TAGCAAGGATTTGCGAGCCCGAGTGGACTTCCACAACAACCTCGTGGGTGTGAAGGTGATAAAGGCTGGA
GTGGAAACCACTTGCAAATGCCATGGTGTGTCTGGCTCCTGCACCGTGCGGACCTGCTGGCGGCAGCTAG
CACCCTTCCACGAGGTGGGCAAGCACCTAAAACACAAATATGAGACCTCGCTCAAGGTGGGCAGCACTAC
CAATGAAGCCACTGGAGAGGCAGGTGCCATCTCCCCACCGCGGGGCCGGGCTTCTGGGTCAGGAGGTGGC
GACCCACTGCCCCGAACACCAGAGCTTGTACACCTGGACGACTCTCCCAGCTTCTGCCTGGCTGGCCGCT
TTTCCCCTGGCACGGCAGGCCGCAGGTGTCACCGGGAGAAGAACTGTGAGAGTATTTGTTGTGGCCGAGG
CCACAACACACAGAGTCGTGTGGTGACAAGGCCCTGCCAATGCCAGGTCCGCTGGTGCTGCTACGTGGAG
TGCAGGCAGTGTACACAGAGAGAGGAGGTCTATACCTGCAAGGGCTGA

Translation (365 aa):
MLDGSLLARWLAAAFGLTLLLAALRPSAAYFGLTGSEPLTILPLTLETEAAAQAHYKACDRLKLERKQRR
MCRRDPGVAETLVEAVSMSALECQYQFRFERWNCTLEGRYRASLLKRGFKETAFLYAISSAGLTHALAKA
CSAGRMERCTCDEAPDLENREAWQWGGCGDNLKYSSKFVKEFLGRRSSKDLRARVDFHNNLVGVKVIKAG
VETTCKCHGVSGSCTVRTCWRQLAPFHEVGKHLKHKYETSLKVGSTTNEATGEAGAISPPRGRASGSGGG
DPLPRTPELVHLDDSPSFCLAGRFSPGTAGRRCHREKNCESICCGRGHNTQSRVVTRPCQCQVRWCCYVE
CRQCTQREEVYTCKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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