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Report for CCDS36266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36266.1 Public Mus musculus 11 Tbx2 23 108 98 CCDS HistoryNCBI Gene:21385Re-query CCDS DB by CCDS ID:36266.1Re-query CCDS DB by GeneID:21385See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000095.6 ENSMUSP00000000095.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000095.6Link to Ensembl Protein Viewer:ENSMUSP00000000095.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000095Re-query CCDS DB by Protein ID:ENSMUSP00000000095
Original member Current member NCBI NM_009324.2 NP_033350.2 Accepted alive Link to Nucleotide Sequence:NM_009324.2Link to Protein Sequence:NP_033350.2Re-query CCDS DB by Nucleotide ID:NM_009324Re-query CCDS DB by Protein ID:NP_033350Link to BLAST:NP_033350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033350.2 711 Q60707 711 100% 0 0

Chromosomal Locations for CCDS 36266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85833107 85833501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85834620 85834887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85835795 85835941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85837053 85837129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85837226 85837389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85837844 85838481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85840568 85841014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGAGAGAGCCGGCGCTGGCAGCCAGCGCCATGGCTTACCACCCGTTCCACGCGCCACGGCCCGCCGACT
TCCCCATGTCCGCCTTCCTGGCGGCAGCGCAGCCCTCCTTCTTCCCGGCGCTAGCGCTGCCGCCCGGCGC
GCTAGGCAAGCCTCTGCCGGACCCGGGCCTGGCGGGGGCGGCGGCCGCGGCAGCAGCGGCGGCGGCGGCG
GCCGAGGCGGGGCTGCACGTCTCGGCACTCGGCCCGCACCCGCCCGCCGCGCATCTGCGCTCGCTCAAGA
GCCTGGAACCCGAGGACGAGGTGGAGGACGACCCCAAGGTGACGCTGGAGGCCAAGGAGCTGTGGGACCA
GTTCCACAAGCTGGGCACCGAGATGGTCATCACCAAGTCCGGGAGGCGGATGTTCCCCCCCTTCAAGGTG
CGAGTCAGCGGCCTGGACAAGAAAGCCAAATACATCCTGCTAATGGACATCGTGGCTGCCGATGACTGCC
GCTATAAGTTTCACAACTCCCGCTGGATGGTGGCAGGCAAAGCCGACCCCGAGATGCCTAAACGCATGTA
CATCCACCCGGACAGTCCGGCCACAGGGGAACAGTGGATGGCCAAGCCTGTGGCCTTCCACAAACTGAAG
CTGACCAACAACATTTCTGACAAGCATGGCTTTACCATCCTGAACTCCATGCACAAGTACCAGCCGCGAT
TCCACATCGTGCGAGCCAATGACATCTTGAAGCTCCCATACAGCACCTTCCGCACCTATGTCTTCCCAGA
GACCGACTTCATCGCTGTCACTGCCTACCAGAATGACAAGATTACACAGCTGAAGATCGACAACAACCCC
TTTGCCAAGGGCTTCCGGGACACTGGGAACGGCCGTCGGGAGAAAAGGAAGCAGCTAACGCTGCCCACTC
TCCGTTTGTATGAGGAGCACTGTAAGCCGGAGCGTGATGGCGCTGAATCCGATGCCTCGTCCTGCGACCC
TCCGCCTGCGCGAGAACCACCGCCCTCCCCCAGCGCAGCGCCCAGCCCTCTGCGCCTACACCGGGCCCGA
GCCGAGGAGAAGCCGGGCGCAGCCGACAGCGATCCTGAGCCGGAGCGGACGGGGGAGGAGCGCTCCGCAG
CGCCCCTGGGCCGCAGCCCTTCGCGGGACGCCAGCCCCGCTCGCTTGACCGAACCCGAACGCTCCCGGGA
GCGGCGCAGCCCGGAGAGGTGCAGCAAGGAACCGACGGAGGGCGGTGGGGACGGCCCGTTTAGCCTGCGG
AGCCTGGAGAAGGAGCGTCCCGAGGCCCGGAGGAAGGACGAGGGGCGCAAGGACGTGGGTGAGGGCAAGG
AGCCCAGCCTGGCGCCGCTGGTGGTGCAGACAGACAGTGCGTCCCCCCTGGGTGCGGGCCATCTGCCTGG
CCTGGCCTTCTCCAGCCACCTGCATGGGCAGCAGTTCTTTGGGCCGCTGGGAGCTGGCCAGCCCCTCTTC
CTGCACCCAGGACAATTCGCCATGGGCCCCGGAGCCTTCTCCGCCATGGGCATGGGTCATCTGCTAGCCT
CGGTGGCAGGCGGCAGTGGCAGTAGCGGAGGCGCCGGTCCCGGAACCGCGGCGGGGCTGGACGCAGGCGG
GCTAGGTCCCGCAGCCAGCGCAGCAAGCACCGCGGCTCCCTTCCCGTTCCACCTCTCCCAGCATATGCTG
GCATCTCAGGGAATCCCAATGCCCACTTTCGGAGGCCTCTTTCCCTACCCGTACACTTACATGGCAGCAG
CGGCCGCCGCCGCCTCCGCTTTACCCGCCACCAGCGCTGCAGCTGCCGCCGCCGCAGCCGCTGGTTCATT
ATCACGGAGCCCATTTCTGGGCAGTGCCCGGCCCCGTCTGCGCTTCAGTCCTTACCAGATCCCTGTCACC
ATCCCACCTAGCACTAGCCTCCTTACCACCGGGCTGGCGGCGGAGGGCTCCAAGGGCGGAAATAGCCGTG
AGCCCAGTCCGCTGCCTGAGCTGGCTCTCCGAAAAGTGGGGGGCCCATCCCGCGGGGCCCTATCGCCCAG
CGGCTCAGCCAAAGAGGCGGCCAGTGAACTGCAGAGCATCCAGAGACTGGTGAGTGGGCTAGAGAGCCAG
CGAGCCCTCTCCCCCGGCCGGGAGTCGCCCAAGTGA

Translation (711 aa):
MREPALAASAMAYHPFHAPRPADFPMSAFLAAAQPSFFPALALPPGALGKPLPDPGLAGAAAAAAAAAAA
AEAGLHVSALGPHPPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKV
RVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLK
LTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNP
FAKGFRDTGNGRREKRKQLTLPTLRLYEEHCKPERDGAESDASSCDPPPAREPPPSPSAAPSPLRLHRAR
AEEKPGAADSDPEPERTGEERSAAPLGRSPSRDASPARLTEPERSRERRSPERCSKEPTEGGGDGPFSLR
SLEKERPEARRKDEGRKDVGEGKEPSLAPLVVQTDSASPLGAGHLPGLAFSSHLHGQQFFGPLGAGQPLF
LHPGQFAMGPGAFSAMGMGHLLASVAGGSGSSGGAGPGTAAGLDAGGLGPAASAASTAAPFPFHLSQHML
ASQGIPMPTFGGLFPYPYTYMAAAAAAASALPATSAAAAAAAAAGSLSRSPFLGSARPRLRFSPYQIPVT
IPPSTSLLTTGLAAEGSKGGNSREPSPLPELALRKVGGPSRGALSPSGSAKEAASELQSIQRLVSGLESQ
RALSPGRESPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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