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Report for CCDS36283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36283.1 Public Mus musculus 11 Ankrd40 23 108 98 CCDS HistoryNCBI Gene:71452Re-query CCDS DB by CCDS ID:36283.1Re-query CCDS DB by GeneID:71452See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021227.5 ENSMUSP00000021227.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021227.5Link to Ensembl Protein Viewer:ENSMUSP00000021227.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021227Re-query CCDS DB by Protein ID:ENSMUSP00000021227
Original member Current member NCBI NM_146024.1 NP_666136.1 Accepted alive Link to Nucleotide Sequence:NM_146024.1Link to Protein Sequence:NP_666136.1Re-query CCDS DB by Nucleotide ID:NM_146024Re-query CCDS DB by Protein ID:NP_666136Link to BLAST:NP_666136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666136.1 324 Q5SUE8-3 324 100% 0 0

Chromosomal Locations for CCDS 36283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94328254 94328387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94333901 94334049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94334428 94334907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94338340 94338521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94339240 94339269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGAGCGCCCTCCTAGAGCAGAAGGAGCAGCAGGAGAGGCTGCGGGAGGCGGCGGCCTTGGGGGACATTC
GGGAGGTGCAGAAACTGGTGGAGAGCGGGGTGGATGTGAACTCGCAAAATGAGGTCAACGGCTGGACCTG
TTTACACTGGGCATGTAAACGCAACCATGGACAGGTGGTGTCCTACCTGCTACAATCAGGAGCTGACAGA
GAGATTCTTACAACAAAAGGGGAAATGCCGGTACAACTAACATCAAGGAGAGAAATCAGGAAGATTATGG
GAGTGGAAGAAGCCGATGAGGAGGAGGAGATCCCTCAGCTGAAGAAGGAGTCAGAACTGCCCTTTGTCCC
CAACTATCTGGCCAACCCAGCTTTCCCTTTTATCTACACCCCTGCAGCAGAAGACTCCACCCAATTGCAG
AATGGGGGCCCCTCCCCACCTCCAGTGTCACCTCCTGCAGATAGCTCACCTCCATTGCTCCCCCCCACAG
AAACCCCTTTGCTAGGGGCCTTTCCTAGGGACCACAGCTCTTTGGCATTGGTCCAGAATGGTGATATTTC
TGCCCCCTCTGCCATACTTAGAACACCAGAAAGCACAAAACCTGGTCCTGTCTGTCAGCCACCAGTGAGT
CAGAACCGCTCCCTGTTCTCTGTCCCATCCAAGCCCCCGGTGTCTCTGGAGCCTCAGAACGGGACGTATG
CAGGCCCGGCGCCAGCATTCCAGCCATTTTTCTTCACCGGAGCATTTCCATTTAATATGCAAGAGCTGGT
ACTCAAAGTGAGGATTCAGAATCCATCTCTTCGTGAAAATGACTTCATTGAAATTGAACTGGATCGACAG
GAACTCACCTACCAAGAACTGCTGAGAGTGAGCTGCTGTGAGCTGGGTGTTAATCCAGACCAAGTGGAAA
AGATAAGAAAGTTACCCAACACTCTGTTAAGAAAGATTAAAGATGAACCAAGACCCTGGAATTAA

Translation (324 aa):
MSALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLQSGADR
EILTTKGEMPVQLTSRREIRKIMGVEEADEEEEIPQLKKESELPFVPNYLANPAFPFIYTPAAEDSTQLQ
NGGPSPPPVSPPADSSPPLLPPTETPLLGAFPRDHSSLALVQNGDISAPSAILRTPESTKPGPVCQPPVS
QNRSLFSVPSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELDRQ
ELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKIKDEPRPWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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