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Report for CCDS36403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36403.1 Public Mus musculus 12 Gen1 23 108 98 CCDS HistoryNCBI Gene:209334Re-query CCDS DB by CCDS ID:36403.1Re-query CCDS DB by GeneID:209334See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166117.3 ENSMUSP00000132098.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166117.3Link to Ensembl Protein Viewer:ENSMUSP00000132098.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166117Re-query CCDS DB by Protein ID:ENSMUSP00000132098
Original member Current member NCBI NM_177331.5 NP_796305.3 Accepted alive Link to Nucleotide Sequence:NM_177331.5Link to Protein Sequence:NP_796305.3Re-query CCDS DB by Nucleotide ID:NM_177331Re-query CCDS DB by Protein ID:NP_796305Link to BLAST:NP_796305.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796305.3 908 Q8BMI4-1 908 100% 0 0

Chromosomal Locations for CCDS 36403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11241255 11242576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11243190 11243333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11246289 11246350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11248215 11248345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11249130 11249210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11250052 11250088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11250714 11250864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11252004 11252092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11254351 11254424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11255157 11255267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11256838 11257014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11260882 11261068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11262407 11262567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGGGAGTGAATGACTTATGGCAAATTCTAGAGCCTGTAAAGCAACATATCCACTTGCAAGATCTTAGTG
GGAAAACCATTGCCGTTGATTTGAGTCTCTGGGTATGCGAGGCACAGACAGTGAAGAAAATGATAGGAAC
TGTCAAGAAGCCCCACCTCAGGAACCTATTTTTTCGTATTTCATATTTAACTCAAATGAATGTAAAACTG
GTGTTTGTAATGGAAGGGGAGCCACCAATGCTGAAAGCTGATGTCATAAGCAAGAGGACTCAGACTCGTT
ACGGGCCTTCTGGAAAATCAAGGTCTCAGAAAACAGGGAGATCACATTTTAAGTCAGTCTTACGAGAGTG
CCTTGAAATGCTCGAGTGCCTGGGAATGCCCTGGGTCCAGGCCGCCGGGGAAGCTGAGGCCATGTGTGCT
TACCTTAATGCCAGTGGCCATGTGGATGGCTGCCTCACCAACGACGGCGATGCTTTCCTTTATGGAGCCC
AGACTGTTTACAGAAATTTCACGATGAACACAAAGGATCCCCATGTTGACTGTTACACGATATCATCTAT
CAAGAGTAAGCTAGGCTTGGATCGAGACGCTCTGGTTGGACTGGCCGTACTTCTGGGTTGTGATTACCTT
CCAAAGGGAGTGCCTGGAGTTGGAAAGGAACAAGCATTAAAACTTTTGCAGATTTTCAAAGGTCAAAGTT
TGCTTCAGAGGTTTAACCAGTGGATTGAAGACCCTTGCTACTCTGTTCCACAATCAGCACCAAAAAAAGT
GGTTCACTGCTCTGTGTGTTCCCACCCAGGTTCGCCAAAGGATCATGAACGTAATGGATGCATATTATGT
AAAAGTGATAAATACTGTGAACCACATGATTATGATTACCTCTGCCCTTGTGAATGGCATCAGACAGACC
ATAATAGGCATCTAAGTGAAATAGAAAACAATATTAAAAAGAAAGCTTGCAGTTGCGAAGGATTTCCATT
CCATGAGGTCATCCAAGAGTTCCTTTTGAATAAGAATAAAATGTTGAAACCGATCACATACCAAAGACCT
GATTTATTATTGTTTCAGAGATTTACTGTTCAAAAAATGGAGTGGCCCAGTCACTATGCATGTGAAAAAT
TGTTGGTGCTTTTGACCCGCTATGACATGATAGAAAGAAAACATGGTAGAAAGACCTCCAATCAACTACA
GCCAATTAGAATTGTTAAACCCCGAGTCAGAAATGGAGTCCATTGTCTTGAAATAGAATGGGAAAAGCCT
GAACATTATGTGGTGGAAGATGGAGACCCTGGAAAACTGAGCCTCCTTACAATGGAAGAAGCGTCCCTGT
TTGAAGCAGCCTATCCTGATGCTGTGGCTGTCTACCAGAAACAGCTGTCAGAGACCAAAGGAAGGAAACA
GAAAAGTATGAAAAATAAGCCTAAAGGAAGCCATTTACCGGAAGCAGATGATGTGATCAATTCTCAGTCA
CTTATGACTTTAAAACCTACATCTAAAGCCTTCCCCAAGCAAAATCCCAAAATTAATTTGGAAAATTCTC
CAGATCCTATTTTAGCACAGGAATCTACTTCCCCCTCATTGAATAGTTTTGTTTCCCCTGAAAATGCTCC
CTGTTTGAATTTACAAGAACAGTTAGTGCCATCTCCCAGAACTTTGGCTATAAAGCAAAGTAAAGATGTC
AGTCATTTTCTAGTTTCAGAATGTAGTCAGCCCAGCTCTTCCTCCCATGACATCTCTGTGATTACTGATC
TGCAGTTGAGTACCATTGATTGGGCGGGTACTTCTTTTAGTAATTCTCCAGCAGTTCAAAGAAACACTTT
CTCTCAAGACTTAGCATCAGAATCTGAGTCATCGGCCATCCTTCCTGACTTTGAACAGCTGTCATATGAA
TCAGAACAAGGGACCTCAGACAGTGAAGGGTCCGGTAGAGACCTTCAGCAGAGCAACCCTGAAGAGCAGC
TCCTTTCTGGCATCAGTGCTTTACATCTTCATGATTTGCCTCTAAAAGAAAGAATACGTATCAAATCTTC
ATGCCCTCAGTATAATGTAGGAGCAGATGCTGGCCTGGAAAGTTTGCCCCTAAAATTGAAAGGCTCTTGT
ATTGCTTACAGTAGCTCTGATGGCTCATCCAATTTTTCAAAGGATCTTACAGGGGTATATCTTCACAAAG
AGTCCAGAAACTCTAAAGTTCTAGACAGCCGACTCCAAGAAAACTGCGGGGCGAATACTTCCTTACCTTA
TTCTTTCAGTGACAAAGCAGTAAAGACTTCCAGTCTTCAAGTTGGGCTGCCAACTGCTGCTATACCTCAT
AATCCAAGAGTTGCTGTGAAAACTACTAAGAACCTTGTCATGAAGAATAGTGTTTGCCTCGAGAGAGATT
CCTCAGATGAAGACAATGCTCCAGGGTCCTGGAAATCAAAGTATACTGCTCCAGAAATGAAACACAGTTC
TCAGAAGCACAGCCTAGTCCATGTCAGAGACAGTACTCACAACAAACTCAGAAATCCTAAAGTGGAATCT
AAAGAAACCAAACTGTGTAATGAGTCTTTTAAAACAGCTGAAGATGAAGAAAACGGGTTCTCAGATCTAG
GGAGAAGTCCTCAGAGTTTTCGACCATGTCATGACAAAGATGAGAACTCTACTGCCTCCTGGGAAAATCC
TCTACCTTTACGCCAGAGGTTAAAACTCAGGTTCCAGAACACTCAAAGTGGATTTTATAATACTTAA

Translation (908 aa):
MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFRISYLTQMNVKL
VFVMEGEPPMLKADVISKRTQTRYGPSGKSRSQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCA
YLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYL
PKGVPGVGKEQALKLLQIFKGQSLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILC
KSDKYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNKNKMLKPITYQRP
DLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQPIRIVKPRVRNGVHCLEIEWEKP
EHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVYQKQLSETKGRKQKSMKNKPKGSHLPEADDVINSQS
LMTLKPTSKAFPKQNPKINLENSPDPILAQESTSPSLNSFVSPENAPCLNLQEQLVPSPRTLAIKQSKDV
SHFLVSECSQPSSSSHDISVITDLQLSTIDWAGTSFSNSPAVQRNTFSQDLASESESSAILPDFEQLSYE
SEQGTSDSEGSGRDLQQSNPEEQLLSGISALHLHDLPLKERIRIKSSCPQYNVGADAGLESLPLKLKGSC
IAYSSSDGSSNFSKDLTGVYLHKESRNSKVLDSRLQENCGANTSLPYSFSDKAVKTSSLQVGLPTAAIPH
NPRVAVKTTKNLVMKNSVCLERDSSDEDNAPGSWKSKYTAPEMKHSSQKHSLVHVRDSTHNKLRNPKVES
KETKLCNESFKTAEDEENGFSDLGRSPQSFRPCHDKDENSTASWENPLPLRQRLKLRFQNTQSGFYNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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