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Report for CCDS36420.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
36420.1 |
Public |
Mus musculus |
12 |
Grhl1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:195733](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:36420.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:195733](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 36420.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000020985.8 |
ENSMUSP00000020985.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000020985.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000020985.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000020985](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000020985](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_145890.2 |
NP_665897.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_145890.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_665897.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_145890](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_665897](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_665897.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_665897.2 |
536 |
Q921D9-2 |
536 |
99.6269% |
0 |
2 |
Chromosomal Locations for CCDS 36420.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1611 nt): ATGGTTCTCCTTGATGATGAACTGTGTGACCTAAACAGCATACCAAATGTGACGGAGCAGCCCCTCATTT CTGCTGGAGAAAACAGGGTGCAAGTGCTGAAAAACGTGCCCTTCAACATCGTCCTCCCCCATAGCAACCA GCTGGGCATTGATAAGAGAGGCCATCTGACAGCTCCCGATACAACAGTCACTGTCTCCATAGCAACCATG CCTACCCACTCCATCAAGACAGAAATCCAGCCGCACGGCTTTGCTGTGGGAATCCCACCAGCCGTGTACC ACTCTGAGCCCACCGAACGTGTGGTGGTTTTTGACCGGAGCCTCAGCACTGATCAGTTCAGCTCTGGCAC TCAGCCCCCCAATGCTCAGCGGAGGACTCCAGACTCCACCTTCTCCGAGACCTTCAAGGAGGGCGTTCAG GAGGTTTTCTTCCCCTCGGAACTCAGCCTTCGGATGCCGGGCATGAATTCAGAGGACTATGTCTTTGACA ATGTTTCTGGGAACAACTTTGAGTATACCCTGGAAGCCTCCAAGTCACTGCGGCAGAAGCAAGGGGACAG CACTATGACATACCTGAATAAAGGCCAGTTCTATCCTGTCACCTTAAAGGAAGGAAGCAGCAATGAAGGG ATTCACCACCCTATCAGCAAAGTTCGAAGTGTGATCATGGTGGTTTTTGCTGAAGACAAAAGCAGAGAAG ACCAGCTGAGACACTGGAAGTACTGGCACTCCCGTCAGCACACGGCCAAACAGAGGTGCATTGACATTGC TGACTACAAAGAAAGCTTCAACACTATCAGCAACATTGAGGAGATAGCTTATAACGCCATTTCCTTCACG TGGGACATCAATGATGAGGCAAAGGTCTTCATCTCTGTGAACTGCTTGAGCACAGATTTCTCTTCTCAGA AGGGTGTGAAGGGCTTGCCACTCAACATTCAAATCGACACATACAGCTATAACAACCGCAGCAACAAGCC GGTTCACCGGGCCTACTGCCAGATAAAGGTCTTCTGCGACAAGGGAGCTGAAAGGAAAATTCGGGATGAA GAACGAAAACAGAGCAAGAGAAAAGTGTCTGACGTTAAAGTGCAGCTGCTTCCCTCGCACAAACGGACAG ACATCACAGTGTTCAAGCCCTTCCTGGACCTCGACACTCAGCCTGTCCTCTTCATTCCGGACGTGCATTT TACCAACCTGCAGCGGGGCAGTCATGTTCTTTCCCTCCCCTCTGAAGAACTGGAAGGTGAAGGCTCTGTC TTGAAAAGAGGGCCATTCGGAACCGAAGATGACTTTGGAGTTCCTCCTCCTGCTAAGCTGACTCGGACAG AAGAACCCAAGAGAGTGCTGCTCTATGTCCGAAAGGAATCAGAAGAAGTCTTCGACGCCCTGATGCTCAA GACGCCGTCTTTGAAGGGCCTGATGGAGGCAATTTCAGACAAGTATGATGTCCCCCATGACAAGATTGGG AAAATATTTAAGAAGTGCAAAAAAGGGATCCTCGTGAACATGGACGACAACATTGTGAAGCACTACTCCA ATGAGGACACCTTCCAGCTGCAGATAGAGGAAGCCGGCGGCTCGTACAAGCTCACCCTGACAGAGATTTA A
Translation (536 aa): MVLLDDELCDLNSIPNVTEQPLISAGENRVQVLKNVPFNIVLPHSNQLGIDKRGHLTAPDTTVTVSIATM PTHSIKTEIQPHGFAVGIPPAVYHSEPTERVVVFDRSLSTDQFSSGTQPPNAQRRTPDSTFSETFKEGVQ EVFFPSELSLRMPGMNSEDYVFDNVSGNNFEYTLEASKSLRQKQGDSTMTYLNKGQFYPVTLKEGSSNEG IHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFT WDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQIDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDE ERKQSKRKVSDVKVQLLPSHKRTDITVFKPFLDLDTQPVLFIPDVHFTNLQRGSHVLSLPSEELEGEGSV LKRGPFGTEDDFGVPPPAKLTRTEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIG KIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIEEAGGSYKLTLTEI
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