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Report for CCDS36554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36554.1 Public Mus musculus 12 Hhipl1 23 108 98 CCDS HistoryNCBI Gene:214305Re-query CCDS DB by CCDS ID:36554.1Re-query CCDS DB by GeneID:214305See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021685.7 ENSMUSP00000021685.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021685.7Link to Ensembl Protein Viewer:ENSMUSP00000021685.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021685Re-query CCDS DB by Protein ID:ENSMUSP00000021685
Original member Current member NCBI NM_001044380.1 NP_001037845.1 Accepted alive Link to Nucleotide Sequence:NM_001044380.1Link to Protein Sequence:NP_001037845.1Re-query CCDS DB by Nucleotide ID:NM_001044380Re-query CCDS DB by Protein ID:NP_001037845Link to BLAST:NP_001037845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037845.1 791 Q14DK5-1 791 100% 0 0

Chromosomal Locations for CCDS 36554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108306411 108306683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108311688 108312334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108316451 108316594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108318454 108318782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108319326 108319452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108319956 108320101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108321803 108321884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108327126 108327208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108327668 108328212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGGCGGGACGGAGGGCTGTGGCCCGGATCGGGCCCGGGGCGCTGCTGGTTCTGCGCGCTCTGCTGGCCG
CCGCGCACCCGCAGTGCTTGGACTTCAGGCCGCCCTTCCGGCCGCCGCAGCCGCTGAGCTTCTGCGCGCA
GTACTCCGCCTTCGGCTGCTGCACCGCGGAGCAGGACGCGGCGCTGGCCCGGCGCTTCCGGGTCCTGGAG
ACCCGCATGGATGCCGGGGTGTGGGCGACGTGTGCCGGCTACGCTCTGGACCTGCTGTGCCAGGAATGTT
CACCCTATGCGGCCCATCTCTATGACGCTGAGGATCCAGCCACCCCACTTCGGACAGTGCCTGGCCTGTG
TGAAGATTATTGCCTGGACATGTGGCAGACCTGCCGAGGCCTCTTTCGTCTCCTCTCCCCTGACCGTGAA
CTCTGGGCCCTGGAGAGCAACCGGGCCAAATTATGCCGCTACCTGTCGCTAGATGACACCGACTACTGTT
TCCCAAGCCTGCTGGTCAACGAGAACCTCAACTCGAACCTGGGCCGTGTAGTGGCTGATGCCAAGGGCTG
CCTGCAGCTGTGTTTGGAGGAGGTGGCCAATGGACTTCGAAACCCGGTTGCAATGGTACATGCTGGGGAT
GGCAGCCACCGCTTCTTCGTGGCCGAGCAGGTGGGGCTGGTGTGGACCTACCTGCCTGACCGCTCCCGCC
TGGAGAAGCCCTTCCTGAATGTGAGCCAAGCAGTGCTTACTTCGCCCTGGGAAGGGGACGAACGTGGCTT
CCTGGGTCTTGCCTTCCACCCCCGCTTCCCACATCCCAGCAAACTCTATGTCTACTATTCGGTGGGGGTC
GGCTTCCGAGAGTGGATCCGCATCAGCGAGTTCAGAGTCTCAGAGGGTGACGAGAACACAGTGGATCATG
GCTCAGAGAGGATAATTCTGGAGATCGAAGAACCAGCTTCCAATCACAATGGGGGCCAGCTGCTCTTTGG
GGATGACGGCTTCCTCTACATCTTTACTGGAGACGGCGGGATGGCTGGAGACCCCTTTGGGAAGTTTGGA
AATGCACAAAACAAGTCTGCTCTGCTGGGCAAGGTGCTGCGCATCGACGTGGACCGTAAGGAGCGCGGCC
TCCACTACGGCATCCCTCCAGACAACCCGTTCGTGGATGATCCCGGAGCTCGGCCTGAGGTCTATGCCCT
GGGCGTGCGCAACATGTGGCGCTGCTCCTTCGACCGCGGAGACCCAATGTCTGGAACTGGCCGTGGGCGC
CTGTTCTGCGGGGACGTGGGCCAGAACAAGTATGAGGAGGTGGACCTGGTGGAGCGGGGCCGCAACTACG
GCTGGCGCGCTCGCGAGGGCTTCGAGTGCTACGACCGCAAGCTGTGCGCCAACACCTCCCTCGATGACGT
GCTGCCGATTTTCGCCTACCCACACAAGCTGGGTAAATCAGTCACCGGAGGCTACGTGTACCGGGGTTGT
GAGTACCCCAATCTCAATGGCCTCTACATTTTTGGCGATTTCATGAGCGGGCGACTGATGTCTCTCCGAG
AGAACCCAGAGACAGGCCAATGGAAGTATAGCGAGGTCTGCATGGGCCGTGGACAGACCTGTGCTTTCCC
AGGTCTCATCAACAACTACTACCCCTACATCATCTCCTTTGCGGAGGACGAGGCTGGGGAGCTGTACTTC
ATGTCCACGGGTGTTCCCAGTGCCACGGCTGCACATGGGGTCATCTACAAAGTCATCGATCCCTCCAGAC
GGGCGCCTCCAGGGAAGTGTAAGATCCGCCCTGCTCAGGTGAAGGTGAGGAGTCATCTCATCCCCTTTGT
GCCCAAGGAAAAGTTCATCCGGACGCCAGAGAGCACTCCGCGCCCCACAGCCCGCGCTCCCACTAAGGCG
CCCCGCCGTAGGCGCCCCACGGCTGCTCCTCCTGCCCCCACCCCGCGACCCACAAAGCCCGCAAGGCCCA
CCCGGCGACCAGGGGCCCGGAAGGGAGGCGGGCGACGGCGGGGACGTCCGAGTACCGCGGTCCCCGAACC
CGAGAACGGATCGGTGCGTCTGGTACGGCCCGCAGGCCTGAGCCCCGGCCGCGGTCGCGTGGAAGTGTTC
ATAGGCGGACGCTGGGGCACGGTGTGCGACGACGCCTGGGACACCAAGGCAGCCGCCGTGGTGTGTCGTC
AGCTGGGTTTTGCGCACGCGGTGCGAGCCGCCAAGCGCGCGGAGTTTGGCGAGGGCCGCGCGCTCCGGAT
CTTGCTGGACGACGTGCGCTGCGCGGGCAGCGAACGCAACCTGCTGGAGTGCGCGCACGCTGGCGTGGGC
ACGCACAATTGCAAGCACGACGAGGACGCTGGCGTCGAGTGCAGCCACCAAGACCCGAACCTGTAG

Translation (791 aa):
MAGRRAVARIGPGALLVLRALLAAAHPQCLDFRPPFRPPQPLSFCAQYSAFGCCTAEQDAALARRFRVLE
TRMDAGVWATCAGYALDLLCQECSPYAAHLYDAEDPATPLRTVPGLCEDYCLDMWQTCRGLFRLLSPDRE
LWALESNRAKLCRYLSLDDTDYCFPSLLVNENLNSNLGRVVADAKGCLQLCLEEVANGLRNPVAMVHAGD
GSHRFFVAEQVGLVWTYLPDRSRLEKPFLNVSQAVLTSPWEGDERGFLGLAFHPRFPHPSKLYVYYSVGV
GFREWIRISEFRVSEGDENTVDHGSERIILEIEEPASNHNGGQLLFGDDGFLYIFTGDGGMAGDPFGKFG
NAQNKSALLGKVLRIDVDRKERGLHYGIPPDNPFVDDPGARPEVYALGVRNMWRCSFDRGDPMSGTGRGR
LFCGDVGQNKYEEVDLVERGRNYGWRAREGFECYDRKLCANTSLDDVLPIFAYPHKLGKSVTGGYVYRGC
EYPNLNGLYIFGDFMSGRLMSLRENPETGQWKYSEVCMGRGQTCAFPGLINNYYPYIISFAEDEAGELYF
MSTGVPSATAAHGVIYKVIDPSRRAPPGKCKIRPAQVKVRSHLIPFVPKEKFIRTPESTPRPTARAPTKA
PRRRRPTAAPPAPTPRPTKPARPTRRPGARKGGGRRRGRPSTAVPEPENGSVRLVRPAGLSPGRGRVEVF
IGGRWGTVCDDAWDTKAAAVVCRQLGFAHAVRAAKRAEFGEGRALRILLDDVRCAGSERNLLECAHAGVG
THNCKHDEDAGVECSHQDPNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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