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Report for CCDS36702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36702.1 Public Mus musculus 13 Habp4 23 108 98 CCDS HistoryNCBI Gene:56541Re-query CCDS DB by CCDS ID:36702.1Re-query CCDS DB by GeneID:56541See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021929.9 ENSMUSP00000021929.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021929.9Link to Ensembl Protein Viewer:ENSMUSP00000021929.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021929Re-query CCDS DB by Protein ID:ENSMUSP00000021929
Original member Current member NCBI NM_019986.3 NP_064370.2 Accepted alive Link to Nucleotide Sequence:NM_019986.3Link to Protein Sequence:NP_064370.2Re-query CCDS DB by Nucleotide ID:NM_019986Re-query CCDS DB by Protein ID:NP_064370Link to BLAST:NP_064370.2

Chromosomal Locations for CCDS 36702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64161986 64162334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64170014 64170176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64174063 64174221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64174790 64174858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64176005 64176088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64182107 64182278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64184573 64184758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64185273 64185329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGAAGGGGGCCCTGGGGAGCCCTGTAGCCGCCGCGGGCGCCGCGATGCAGGAGACGTTCGGCTGCGTCG
TGGCCAACCGCTTCCATCAGCTGCTGGACGACGAGTCGGACCCGTTCGACATCCTGCGGGAGGCCGAGCA
CCGGCGCCAGCAGCAGCTGCAGCGCAAGCGTCGCGATGAGGCGGCGGCGGCGGCCAGCGGGGCCGGGCAC
CGTGGCGGCAGGAGCCCGGCTGTGGCCTCAGGACACAGGCCTGGCGCAGGCGGCCGCAGGGAGTCGCAGA
AGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACAGCCCTGGGGGCCCGCAGCCGCCAGG
CCAGAAGCGGACTCCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAACAGGGGGACAGACGTGGTGCTT
GAAAGAGCAGAGCGAAGGTCCTACAGGGAATACCGGCCCTATGAGACTGAGAGACAGGCTGACTTGCCAG
TGGAGAAGTTTACCGATGAAAAACCAGTTGACAGGTTTGATCGAGACAGACCACTGAGAGGACGTGGAGG
CCCCAGAGGAGGCCTGAGGAGCAGAGGCCGAGGCGGTCCTGGGAACAGAGCTTTTGACTCCTTTGACCAA
AGAGGGAAACGAGACTTTGAGAGATACAGTAGCAATGATAAAACAAACAGAATGGAGGACAGCATGGGTG
GCTGTGGCATTCGCCCCTGGGGATCAGGTAAAGACACTAGTGATACAGAGCCACCTGCACCCATGGAAGA
GACCTCGATGATGGAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAG
GTAGAAGAGGAAAACCAAGTCCAAGAGATGACCTTAGATGAGTGGAAAAACCTTCAAGAACAAACCAGAC
CAAAGCCTGAGTTCAATATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAGTC
CAGATACAGAGACGATATGGTGAAGGAGGACTATGAGGATGAGTCTCACGTCTTCCGGAAAGCTGCCAAT
GACATCACATCCCAGCTGGAGATTAACTTTGGTAACCTCCCTCGCCCTGGTCGGGGAGCCAGAGGCAGCA
CCCGGGGAGGCCGAGGGAGAATGAGAAGAACAGAGAACTATGGCCCCCGTGCAGAAGTGGTGACCCAAGA
TGTTGCTCCCAACCCGGATGACCCTGAGGACTTCCCCGCCCTGGCCTAA

Translation (412 aa):
MKGALGSPVAAAGAAMQETFGCVVANRFHQLLDDESDPFDILREAEHRRQQQLQRKRRDEAAAAASGAGH
RGGRSPAVASGHRPGAGGRRESQKERKSLAASGAQQPDSPGGPQPPGQKRTPRRGEQQGWNDNRGTDVVL
ERAERRSYREYRPYETERQADLPVEKFTDEKPVDRFDRDRPLRGRGGPRGGLRSRGRGGPGNRAFDSFDQ
RGKRDFERYSSNDKTNRMEDSMGGCGIRPWGSGKDTSDTEPPAPMEETSMMEECQGALDEESAAKVPELE
VEEENQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPSKAVVIHKSRYRDDMVKEDYEDESHVFRKAAN
DITSQLEINFGNLPRPGRGARGSTRGGRGRMRRTENYGPRAEVVTQDVAPNPDDPEDFPALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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