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Report for CCDS36756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36756.1 Public Mus musculus 13 Nsa2 23 108 98 CCDS HistoryNCBI Gene:59050Re-query CCDS DB by CCDS ID:36756.1Re-query CCDS DB by GeneID:59050See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073456.8 ENSMUSP00000073161.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073456.8Link to Ensembl Protein Viewer:ENSMUSP00000073161.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000073456Re-query CCDS DB by Protein ID:ENSMUSP00000073161
Original member Current member NCBI NM_021552.5 NP_067527.3 Accepted alive Link to Nucleotide Sequence:NM_021552.5Link to Protein Sequence:NP_067527.3Re-query CCDS DB by Nucleotide ID:NM_021552Re-query CCDS DB by Protein ID:NP_067527Link to BLAST:NP_067527.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067527.3 260 Q9CR47 260 100% 0 0

Chromosomal Locations for CCDS 36756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 97131161 97131228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97131843 97132035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97133539 97133718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97135294 97135444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97135521 97135708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97137755 97137757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGCCACAAAATGAATATATTGAATTGCACCGCAAACGATACGGATATCGTTTGGACTACCATGAGAAAA
AGAGAAAGAAAGAAGGTCGGGAGGCCCATGAACGTTCAAAGAAGGCAAAAAAAATGATTGGCCTGAAGGC
TAAGCTCTACCATAAACAGCGCCATGCCGAGAAAATACAAATGAAAAAGACTATTAAGATGCATGAGAAG
AGAAACACCAAGCAGAAGGATGATGAGAAGACGCCGCAGGGAGCAGTCCCTGCCTATCTGCTGGACAGAG
AGGGCCAGTCGAGAGCAAAAGTCCTTTCTAACATGATTAAGCAGAAACGGAAAGAAAAGGCGGGAAAATG
GGAGGTCCCTCTACCCAAAGTTCGTGCCCAAGGAGAAACAGAAGTATTGAAAGTTATTCGGACAGGAAAA
AGGAAAAAGAAGGCATGGAAGAGAATGGTTACTAAAGTCTGTTTTGTTGGCGATGGCTTTACAAGAAAAC
CACCGAAATATGAAAGGTTCATTAGGCCCATGGGTCTACGTTTCAAAAAAGCCCATGTCACACACCCTGA
GCTGAAAGCTACCTTTTGCCTGCCTATTCTCGGTGTGAAAAAGAATCCATCGTCCCCATTATATACAACC
CTGGGTGTGATCACCAAAGGTACAGTTATTGAAGTGAATGTGAGCGAGCTGGGCCTTGTGACACAAGGAG
GCAAGGTGATTTGGGGAAAGTACGCCCAAGTTACCAACAATCCTGAGAACGATGGGTGCATAAATGCGGT
CTTGCTGGTCTGA

Translation (260 aa):
MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK
RNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK
RKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTT
LGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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