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Report for CCDS36760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36760.1 Public Mus musculus 13 Tnpo1 23 108 98 CCDS HistoryNCBI Gene:238799Re-query CCDS DB by CCDS ID:36760.1Re-query CCDS DB by GeneID:238799See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109399.8 ENSMUSP00000105026.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109399.8Link to Ensembl Protein Viewer:ENSMUSP00000105026.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109399Re-query CCDS DB by Protein ID:ENSMUSP00000105026
Original member NCBI NM_001048267.1 NP_001041732.1 Updated not alive Link to Nucleotide Sequence:NM_001048267.1Link to Protein Sequence:NP_001041732.1Re-query CCDS DB by Nucleotide ID:NM_001048267Re-query CCDS DB by Protein ID:NP_001041732
Current member NCBI NM_001048267.2 NP_001041732.1 Accepted alive Link to Nucleotide Sequence:NM_001048267.2Link to Protein Sequence:NP_001041732.1Re-query CCDS DB by Nucleotide ID:NM_001048267Re-query CCDS DB by Protein ID:NP_001041732Link to BLAST:NP_001041732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041732.1 890 Q8BFY9-2 890 100% 0 0

Chromosomal Locations for CCDS 36760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98846456 98846563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98847328 98847402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98849155 98849254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98850108 98850183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98852855 98852950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98853400 98853498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98855143 98855230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98855312 98855578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98856889 98856975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98858386 98858557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98859763 98859988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98860641 98860793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98863708 98863876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98864428 98864488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98864969 98865087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98867046 98867168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98870240 98870321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98875604 98875737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98878620 98878726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98884515 98884664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98888466 98888541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98890677 98890781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2673 nt):
ATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTTCAGCAGATCCTGCAGCTGCTCAAGGAGTCCCAGT
CCCCAGACACCACCATCCAGAGGACCGTGCAACAAAAACTGGAACAACTCAATCAATATCCAGATTTTAA
CAACTACTTGATTTTTGTTCTTACAAAATTAAAATCTGAAGATGAGCCCACACGGTCATTGAGCGGTCTG
ATCTTGAAGAACAATGTGAAAGCTCATTTTCAGAACTTCCCAAATGGTGTGACAGACTTCATCAAGAGTG
AATGTCTAAATAACATTGGGGACTCCTCTCCGTTGATCAGAGCCACTGTCGGTATTTTAATTACAACCAT
AGCCTCCAAGGGAGAGCTGCAGAATTGGCCTGATCTCTTACCAAAACTCTGTAGCCTGCTGGATTCCGAA
GACTACAACACTTGTGAGGGAGCCTTCGGTGCCCTTCAGAAGATATGTGAGGACTCTGCAGAGATTTTAG
ACAGTGATGTCTTAGATCGCCCTCTCAACATCATGATCCCCAAGTTTTTACAGTTTTTCAAGCACAGCAG
TCCCAAAATAAGGTCTCATGCTGTTGCATGTGTCAATCAGTTCATCATCAGTCGGACCCAGGCGCTCATG
CTGCACATCGATTCCTTCATTGAGAACCTCTTTGCACTGGCTGGCGACGAGGAAGCAGAGGTGCGGAAGA
ACGTGTGCCGGGCGCTTGTGATGTTGCTTGAAGTCCGGATGGATCGCCTGCTTCCTCATATGCACAACAT
AGTCGAGTACATGCTGCAGAGAACCCAAGACCAAGATGAGAATGTAGCTCTGGAGGCCTGTGAATTCTGG
CTGACTTTGGCTGAACAGCCAATATGCAAAGATGTACTTGTAAGGCATCTACCAAAGTTGATTCCTGTGT
TAGTGAATGGCATGAAGTACTCAGATATAGATATTATCCTGCTTAAGGGTGATGTTGAGGAAGATGAGAC
CATCCCGGATAGTGAGCAGGATATACGGCCGCGGTTTCATCGCTCGAGGACAGTGGCTCAGCAGCATGAG
GAGGATGGGATTGAGGAGGAAGACGATGATGATGACGAAATTGATGATGATGACACGATTTCTGACTGGA
ACCTGAGAAAGTGTTCTGCTGCTGCTCTCGATGTTCTCGCAAATGTTTATCGTGATGAGCTTTTGCCGCA
CATTCTGCCACTTTTGAAAGAATTGCTTTTCCATCATGAATGGGTTGTGAAAGAATCTGGCATCTTGGTT
TTAGGAGCAATTGCTGAAGGTTGTATGCAAGGCATGATTCCGTACCTGCCCGAGCTCATTCCTCACCTTA
TTCAGTGCCTTTCTGATAAAAAGGCTCTTGTGCGTTCCATCACCTGCTGGACTCTTAGCCGCTATGCACA
CTGGGTAGTCAGCCAGCCACCAGATACGTACCTGAAGCCATTAATGACAGAACTGCTGAAGCGTATCCTC
GATAGCAACAAGAGAGTACAGGAAGCAGCTTGCAGTGCCTTCGCTACATTAGAAGAGGAGGCTTGTACAG
AGCTCGTCCCTTACCTTGCTTATATACTCGATACCCTCGTCTTCGCCTTCAGTAAATACCAGCATAAGAA
CCTGCTCATTCTGTACGACGCCATAGGGACACTGGCAGATTCAGTGGGACATCATTTAAACAAGCCAGAA
TATATTCAGATGCTAATGCCTCCTTTGATCCAGAAATGGAACATGCTGAAGGATGAAGACAAGGATCTTT
TCCCTTTGCTTGAGTGTCTCTCGTCTGTTGCCACAGCCTTGCAGTCTGGCTTCCTTCCATATTGTGAACC
TGTATATCAGCGTTGCGTAAACCTAGTTCAGAAGACTCTGGCACAAGCCATGCTAAACAATGCTCAACCA
GAACAGTATGAAGCTCCAGATAAAGATTTTATGATTGTGGCTCTTGACTTACTCAGCGGCCTGGCTGAGG
GCCTGGGAGGCAACATTGAGCAGCTGGTGGCCCGCAGTAACATCCTGACGCTGATGTACCAGTGCATGCA
GGATAAAATGCCCGAGGTTCGGCAGAGTTCTTTTGCATTGCTAGGTGACCTGACTAAAGCGTGCTTCCAG
CATGTTAAGCCTTGTATAGCTGATTTCATGCCAATATTGGGAACCAATCTAAATCCAGAGTTTATTTCAG
TCTGCAACAATGCCACCTGGGCGATTGGGGAAATATCAATCCAAATGGGTATAGAGATGCAGCCCTACAT
CCCTATGGTGTTGCACCAGCTTGTGGAGATCATTAACAGACCCAACACCCCAAAGACGCTGTTGGAGAAC
ACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGGTGGCCCCCATGCTACAGCAGTTTA
TAAGACCCTGGTGTACCTCTCTGAGAAACATAAGAGACAATGAAGAAAAAGATTCAGCATTCCGTGGGAT
TTGTACCATGATCAGTGTGAATCCCAGTGGCGTAATCCAAGATTTTATATTTTTTTGTGATGCTGTTGCA
TCATGGATTAACCCAAAAGATGATCTCAGAGACATGTTCTGTAAGATCCTTCATGGATTTAAAAACCAAG
TTGGGGATGAAAATTGGAGGCGATTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTTGCAGCTTT
TTATGGTGTTTAA

Translation (890 aa):
MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGL
ILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE
DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM
LHIDSFIENLFALAGDEEAEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFW
LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHE
EDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL
DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE
YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP
EQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ
HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLEN
TAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA
SWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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