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Report for CCDS36791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36791.1 Public Mus musculus 13 Paip1 23 108 98 CCDS HistoryNCBI Gene:218693Re-query CCDS DB by CCDS ID:36791.1Re-query CCDS DB by GeneID:218693See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36791.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109203.8 ENSMUSP00000104826.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109203.8Link to Ensembl Protein Viewer:ENSMUSP00000104826.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109203Re-query CCDS DB by Protein ID:ENSMUSP00000104826
Original member NCBI NM_001079849.2 NP_001073318.1 Updated not alive Link to Nucleotide Sequence:NM_001079849.2Link to Protein Sequence:NP_001073318.1Re-query CCDS DB by Nucleotide ID:NM_001079849Re-query CCDS DB by Protein ID:NP_001073318
Current member NCBI NM_001079849.3 NP_001073318.1 Accepted alive Link to Nucleotide Sequence:NM_001079849.3Link to Protein Sequence:NP_001073318.1Re-query CCDS DB by Nucleotide ID:NM_001079849Re-query CCDS DB by Protein ID:NP_001073318Link to BLAST:NP_001073318.1

Chromosomal Locations for CCDS 36791.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 119430231 119430329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119437969 119438154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119440759 119440871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119445737 119445848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119447715 119447840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119449904 119450010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119450696 119450813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119451792 119451846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119455696 119455789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119456988 119457081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCTAAGCCCCAGGTGGTTGTGGCTCCTGTGTTAATGTCTAAGCTGTCTGCGAACGCCCCCGAATTTT
ACCCATCAGGTTATTCTTCTAATTATACAGAATCCTATGAGGATGGTTGTGAGGATTACCCGACTCTCTC
AGAATACGTTCAGGATTTTCTGAATCATCTGACAGAACAGCCTGGTAGTTTTGAAACAGAAATTGAACAG
TTTGCAGAAACCCTGAATGGATGGGTCACAACAGATGATGCTTTGCAAGAACTTGTGGAACTTATCTACC
AACAGGCCACGTCTATCCCAAATTTCTCTTACATGGGAGCTCGCCTGTGTAATTACCTGTCCCATCATCT
GACAATTAGTCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGGTGCAGGACGGAGTATGAAGCT
AAAGACCAAGCTGCAAAAGGGGATGAAGTGACTCGAAAACGATTTCATGCATTTGTTCTGTTTCTGGGAG
AACTATATCTTAACCTGGAGATTAAAGGAACAAATGGACAAGTTACAAGAGCAGATATTCTTCAGGTTGG
TCTTCGGGAACTGCTGAATGCTCTGTTTTCTAATCCTATGGATGACAACTTAATTTGTGCAGTAAAATTG
CTAAAGTTGACAGGATCAGTTTTAGAAGATACTTGGAAGGAAAAGGGGAAAACTGATATGGAAGAAATAA
TTCAGAGAATTGAAAATGTTGTCCTAGATGCAAACTGCAGCAGAGATGTAAAACAGATGCTCTTGAAGCT
TGTTGAACTTCGATCAAGTAACTGGGGTAGGGTCCATGCAACTTCAACATACAGAGAAGCTACCCCTGAA
AATGACCCTAATTACTTCATGAATGAACCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCAGCGG
ACCCAGATTACCAAGAAAAGTATCAAGAGTTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAAAA
TGGAACAGATTTATCAGGGGCTGGTGACCCATATTTGGATGATATCGATGATGAGATGGACCCAGAAATT
GAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGCAAGCGAAAACAGTAA

Translation (367 aa):
MAKPQVVVAPVLMSKLSANAPEFYPSGYSSNYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQ
FAETLNGWVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEA
KDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
LKLTGSVLEDTWKEKGKTDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPE
NDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEI
EEAYEKFCLESERKRKQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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