CCDS Report for Consensus CDS

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Report for CCDS36843.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
36843.1	Public	Mus musculus	14	Ccdc66	23	108	98

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36843.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000223689.1	ENSMUSP00000153023.1	Accepted	alive
		NCBI	NM_177111.3	NP_796085.3	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_796085.3	935	Q6NS45-1	935	100%	0	0

Chromosomal Locations for CCDS 36843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)

Genome Browser links:

Chromosome	Start	Stop
14	27482516	27482602
14	27483808	27483932
14	27484065	27484318
14	27485093	27485133
14	27486463	27486950
14	27490034	27490144
14	27490663	27490807
14	27491788	27491949
14	27493019	27493103
14	27493272	27493522
14	27494081	27494212
14	27497339	27497451
14	27498441	27498544
14	27498724	27498889
14	27500241	27500682
14	27505638	27505663
14	27506651	27506715
14	27508422	27508432

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2808 nt):
ATGAACCTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGTTAATACTGTCCC CATATGAGCATAAATCAAAAGTTTCTGTGAAGATGGGAAATAAGTTCAAAATTGCAAAATGTCCTTTAAG AACAAAACAGACTGGACATACTTTAAAATCAACACAAAATACTTACATTGGGAATGAAAACCTTTCTCAA AAGAAGATCTCTACTTTAGACACTTCACAAGCAAAACCTGAAAATAGTAGATTGACATTTTCACCCAGTA CGGATAAGCAGTATTCAGAAAAAGACAGTGTCCGTGTTCAAAAGGAGATTTCACCTACAACCTCTAATAT ACGGAAGATTATAAACACTACCGGTACTTGTCCAGTGGCTAAACAGAAGCCTTGCAAAAAAAACCCCACA GCGGAGACCATGAACAGCGGTTTGGTGTGTCTCACACAAGACCAGCTTCGGCAGATTTTGATGCTGAGTG TGAACCAGGGAAATGGATCTGTGTGCCTCACTGAGACTGGGGAGGAGGAAGCAAGTCAAGATAGTTTACA TTTAATCAATATTCCTAGTCAGCCAAAGGATGTGAATGACACAGGATTCCTGCAAAACACGGAGGCCGCT TCCCCTGTCACGAGTGAACATGAGCATGTCCACCGGAGAGCTCAAGAGGCATTTCAGCAGTGTGAGCAGA AAGCTGCCACAGAGAATGAATGGAAACCAGCTGACATATTCAGTACTCTGGGGGAAAGGGAACGTGATAA AAGTTTGTTGGAAGCAAGAAGAGCCCAGTGGAAAAAAGAGCTAGATGAACAGGTTGCCTTAAAGAAGAAA GAGAAAGAAGCTTCCCAAAAATGGCATAACCCTTGGAAGCCATCTGATATAGAGTGTGAGAAGTCTCAAG TCCATGACCAGTCTAAGGAAGCAAGACTGCTGGAGTCCCCTTGCAGCGCCATTAAACAGGAGCAGCAGAG AAAATGGATTGAAGAATTGAATAAACAAGTTGAAGATGACCAGCAAAGAAAAGCAGAGGAAAGAATGATA TATTCAAAGGGTGAGGAACATGACAGATGGGCAGTGCATTTTGATTCATTAAAGAGTCATCCTGGCTCCC AGTCTCGACTGTCCTCTCAGTTAACACACCAACACCTGGAGTCGCTTTGTGTGTCTCCCGACACTCAGGA GCTGGCTGATGTCAATGGTGTTTTCACACCTCCACCTGGAGTCCAGGCGGAGCCTTCAGAGAAAGAACAA AGAGCCAGACCTGTTCTGGAGATGGCTGTATCACACGGTCCGAAAACAAACTTTCTCCGTTCTATGACTG CACTCTTGGATCCAGCCCAGATTGAGGAGCGGGAACGACGCCGACAAAAACAATTAGAACATCAGAAAGC AATCATGGCTCAGGTAGAAGAGAACCGCAGGAAGAAGCGGCTAGAGGAAGAACAAAGAAAGAAGGAGGAG CAGGAACTGGAGCTGCGCTTGGCAAGGGAACGGGAGGAGATGCAGAGGCAGTATGAAGAGGACATTCTGA AGCAGAGACAGAGAGAAGAAATCATGACTCTAAAGACAAACGAGCTATTCCACACAATGCAGCGAGCTCA GGAGTTGGCACAGAGGCTCAAACAGGAGCAGAGGATCAGAGAACTGGCTCAGAAGGGACATGATACATCC AGGCTGATTCAAAATCTTGGTGCACAAGTGGATTATAAGGCATTCACTACCATCTCCAGTTCCCACAGTG ACCCTGAGGAGACTGCTGACACTTCAACAGCCTCTCCCAAGAAGGACACAGGCGTGCAGACAGATGACGT AAACTTAGGAATTTTCAATGATGCGCTACCACCCTGTGGATCGGTAACAGAGAAGGGTATTAGAAACATT TCTTCTCCAGAGATTTCTGCAGAATTCAGTGGACAGACTGACATTAGAAAAGAGAACCAAGAACTAAGTA TGAATAAAGGCACTAATTTAGACAAAGAAAACAGCTGGCATAATGGCCAGTGTAATCAGTACAGAAGAAC AGAGAAACAAACAAAACTCATGAAGAAATGTCCTAAGAAGCCTGCTTGGAATATAAACAAACCTCTCAAA AAGTATGTTCCTGCATCAGCCAAGTACCCCGCACATCTCCAGAAGGAGAAAGAAGAAAAAAAGGTACAGA GGCAAATGGAGCTGCTTCACTTAGTGGAGAGAAACAATCCCGAGAATCTCTCCCAAAACAGAGGCATTTC ACCACTTGCTACATCTCATCGAGAAACTGAGTCAGAGAGCAGGTTGCACCTTATCAAAAAGGTAGAAGAA CCTCTGAAAACTCCTTCAGTTAGTAAAGAAAGGTTTCAAACATCACCAGCAGTAAAAAACAGAACTCAAC AAACTCAAAGTAATGTATTACACTTACCACTAAAAAACAATGACTATGAAAAGGAGACTCTGACTTTAGG AGATGGTCATACTAAATTATCAGATGAGATGTCTGAGCCATCCCATTTTATTCCCTACGTTCGAACAAAT GAGATCTATTATCTTGATCCAGACGCACCCTTGTCTAGGCCTTCAACCCAGGACAACCAATACCAAAAAT CTCATGATTGTGCCCGAGAACAAGAGCTATTTGACTCTGACCATATCAGGGATCCACTTCTTAATCCTAA ATTAGTGAAAAACAGGGACCGACAGCAAGCTATCCTTAAGGGGCTTTCAGAACTAAGACAGGGTCTTCTC CAGAAACAAAAGGAGTTGGAAACGAATCTCATACCCTTAACTGCAAACCAAGAAGATAATTTTAGTTCTT CGTTTTAA
Translation (935 aa):
MNLGDGLKLETELLDGKTKLILSPYEHKSKVSVKMGNKFKIAKCPLRTKQTGHTLKSTQNTYIGNENLSQ KKISTLDTSQAKPENSRLTFSPSTDKQYSEKDSVRVQKEISPTTSNIRKIINTTGTCPVAKQKPCKKNPT AETMNSGLVCLTQDQLRQILMLSVNQGNGSVCLTETGEEEASQDSLHLINIPSQPKDVNDTGFLQNTEAA SPVTSEHEHVHRRAQEAFQQCEQKAATENEWKPADIFSTLGERERDKSLLEARRAQWKKELDEQVALKKK EKEASQKWHNPWKPSDIECEKSQVHDQSKEARLLESPCSAIKQEQQRKWIEELNKQVEDDQQRKAEERMI YSKGEEHDRWAVHFDSLKSHPGSQSRLSSQLTHQHLESLCVSPDTQELADVNGVFTPPPGVQAEPSEKEQ RARPVLEMAVSHGPKTNFLRSMTALLDPAQIEERERRRQKQLEHQKAIMAQVEENRRKKRLEEEQRKKEE QELELRLAREREEMQRQYEEDILKQRQREEIMTLKTNELFHTMQRAQELAQRLKQEQRIRELAQKGHDTS RLIQNLGAQVDYKAFTTISSSHSDPEETADTSTASPKKDTGVQTDDVNLGIFNDALPPCGSVTEKGIRNI SSPEISAEFSGQTDIRKENQELSMNKGTNLDKENSWHNGQCNQYRRTEKQTKLMKKCPKKPAWNINKPLK KYVPASAKYPAHLQKEKEEKKVQRQMELLHLVERNNPENLSQNRGISPLATSHRETESESRLHLIKKVEE PLKTPSVSKERFQTSPAVKNRTQQTQSNVLHLPLKNNDYEKETLTLGDGHTKLSDEMSEPSHFIPYVRTN EIYYLDPDAPLSRPSTQDNQYQKSHDCAREQELFDSDHIRDPLLNPKLVKNRDRQQAILKGLSELRQGLL QKQKELETNLIPLTANQEDNFSSSF

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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