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Report for CCDS37146.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37146.1 |
Public |
Mus musculus |
15 |
Tnrc6b |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:213988](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37146.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:213988](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37146.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000067689.8 |
ENSMUSP00000064336.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000067689.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000064336.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000067689](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000064336](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_144812.3 |
NP_659061.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_144812.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_659061.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_144812](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_659061](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_659061.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_659061.2 |
1810 |
Q8BKI2-1 |
1810 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 37146.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5433 nt): ATGCAAACCAATGAGGGAGAAGTAGAGGAAGAAAGCAGCTCCCAGGTGGAACAGGAGGATTTTGTAATGG AAGGGCATGGCAAGACTCCACCTCCTGGAGAAGAAAGCAAACAAGAGAAGGAGCAAGAAAGGGAAGAACA GTTAATGGAAGACAAGAAAAGGAAGAAAGAGGATAAAAAGAAAAAAGAAGCCACCCAGAAGGTCACGGAA CAAAAAACCAAAGTGCCCGAAGTGACGAAACCAAGTTTAAGCCAACCAACGGCCGCCAGCCCAATTGGCA GCTCTCCATCGCCACCAGTCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCGAACGGACAACCGCC AAGCGCCGCCCGCTACATGCCTCGGGAGGTGCCACCGCGATTCCGTTGCCAGCAGGACCATAAAGTGTTA CTAAAACGTGGGCAGCCCCCTCCACCGTCCTGCATGCTCCTCGGGGGTGGGGCGGGGCCTCCTCCCTGCA CAGCACCTGGAGCAAACCCCAACAACAACGCACAAGTGACAGGAGCGCTGCTGCAGAGTGAGAGTGGGAC TGCACCAGAGTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATTCCACTTGGGGCCCGGGAGCC TCCTCCAACAGCGGCGCCTCCCCCAACCCAATTCACATCTGGGACAAGGTGATTGTAGACGGGTCTGACA TGGAAGAGTGGCCTTGTATTGCCAGCAAAGACACTGAATCTTCTTCCGAAAACACCACCGATAACAACAG TGCCTCGAACCCTGGCTCTGAGAAGAGCAGTCTGCCAGGAAGCACCACTAGTAACAAAGGCAAAGGGAGC CAATGCCAGGCTGCAAGTTCTGGGAACGAATGTAATCTTGGGGTCTGGAAATCTGACCCCAAGGCTAAGT CTGTTCAACCTCCCAACTCTACTTCAGATAGCAACAATGGACTAGGAAACTGGAGGAGCACGAGTGGTCA GGATAGAATTGGACCTGGCTCTGGCTTCAGCAACTTTAACCCAAATAGCAACCCATCTGCCTGGCCAGCA TTGGTCCAAGAAGGGACTTCTAGAAAAGGGGCATTGGAAACAGAAAGTAGTAGTTCCAGTGCACAAGTTA GCACAGTAGGTCAGGCATCCAGGGAACAGCAGTCAAAGATGGAAAATGCGGGTGTTAATTTTGTTGTCTC TGGCAGAGAACAGGCTCAAATTCATAACACTGATGGACCAAAAAATGGAAACACTAACTCCTTGAACTTA AGTTCACCAAACCCCATGGAAAATAAGGGAATGCCCTTTGGAATGGGCTTGGGGAACACCTCCAGGAGCA CTGATGCCCCTTCACAAAGCACTGGAGATCGAAAGACTGGGAGTGTTGGGTCTTGGGGTGCAGCTAGGGG GCCTTCTGGAACTGACACAGTCTCTGGACAAAGCAATTCTGGAAATAATGGGAACAATGGAAAAGACAGA GAGGACTCCTGGAAAGGAGCTTCTGTTCCAAAACCAACTGGGTCAAAAAGTGACTCTTGGGACAACAATA ACAGGTCTACGGGTGGGTCCTGGAACTTTGGCCCTCAGGACAATAATGACAACAAATGGGGTGAAGGGAA CAAAATGACATCTGGGGTCTCTCAGGGAGAATGGAAACAGCCGACTGGGTCTGATGAGTTGAAAATTGGA GAATGGAGTGGTCCAAACCAACCAAATTCTAGCACTGGAGCATGGGACAATCAAAAGGGCCACCCCCTCC CTGAAAACCAAGGCAATGCCCAGGCTCCCTGTTGGGGAAGATCTTCCAGCTCCGCAGGAAGTGAAGTTGG AGGTCAAAGCACTGGAAGCAACCACAAAGCAGGAAGTAGTGACAGTCATAATTCTGGTCGTCGGTCATAT AGGCCCACGCATCCTGATTGCCAGGCTGTCTTGCAGACTCTTTTGAGCCGGACTGATTTGGACCCTAGGG TGCTCTCAAACACTGGCTGGGGCCAAACTCAAATTAAGCAGGACACAGTGTGGGATATTGAAGAGGTGCC AAGGCCTGAGGGGAAATCTGACAAAGGAACTGAGGGGTGGGAGAGCGCTGCCACACAGACCAAGAACTCA GGGGGCTGGGGAGATGCACCCAGCCAAAGCAATCAAATGAAGTCTGGATGGGGGGAGCTCTCAGCCTCGA CAGAGTGGAAAGACCCCAAGAGCACAGGAGGCTGGAATGACTATAAGAACAACAACTCTTCTAACTGGGG AGGAGGCCGAGCAGATGAAAAGACACCTTCCTCTTGGAATGAGAGTTCTTGTAAGGATCAGGGGTGGGGA GGTGGGCGCCAACCCAACCAAGGATGGACTTCTGGGAAGAATGGTTGGGGCGAGGAGGTGGATCAAGTGA AAAATAATAATTGGGAAAGTTCTGCCAATAAGCCTGTGTCTGGGTGGGGTGAAGGAGGACAGAATGAAAT TGGAACTTGGGGTAATGGTGGGAATACAAACCTAGCATCAAAAGGTGGGTGGGAAGATTGCAAAAGATCC CCTGCATGGAATGAGACAGGCAGACAGCCCAATTCCTGGAATAAACAACACCAACAGCAGCAGCAGCCAC CGCCACCACAGCCAGAGGCTTCTGGTTCATGGGGAGGCCCACCCCCGCCACCTCAAGGCAATGTTCGACC TTCTAATTCCAACTGGAGCAGTGGACCCCAGCCTACAACCCCTAAGGATGATGAACCCAGTGGTTGGGAG GAGCCATCCCCACAGTCAATTAGTCGGAAAATGGACATTGATGATGGCACTTCAGCTTGGGGAGACCCTA ACAGTTATAACTACAAGAATGTGAACCTTTGGGATAAGAATTCTCAAGGGGGCCCAGCACCTCGAGAACC AAACCTGCCTACCCCAATGACCGGGAAATCAGCATCAGTCTGGAGCAAAAGCACACCACCTGCTCCAGAT AATGGGACTTCAGCCTGGGGTGAGCCAAATGAAAGCAGTCCTGGGTGGGGTGAAATGGATGATGCAGGAG CATCAACCACAGGCTGGGGAAACACACCTGCCAACGCTCCCAATGCCATGAAACCCAATTCCAAATCTAT GCAAGACGGCTGGGGGGAGAGTGACGGACCAGTCACAGGAGCTCGCCATCCTAGCTGGGAAGAGGAGGAT GACGGAGGAGTCTGGAACACCGCCGGCTCTCAGGGAAGCACTTCCTCCCACAACTCAGCAAGCTGGGGAC AAGGAGGAAAGAAACAAATGAAGTGCTCACTAAAAGGAGGAAACAATGATTCATGGATGAATCCTCTTGC CAAACAGTTTTCAAATATGGGATTGCTGAGTCAAACTGAGGATAACCCAAGCAGCAAAATGGATTTGTCT GTAGATAAGAAATTTGATGTGGACAAGAGAACAATGAATCTCGGGGATTTTAATGATATCATGAGGAAGG ATCGACCTGGGTTCCGTCCACCTAATTCCAAAGACTTGGGAACCACAGACAGTGGGCCTTATTTTGAGAA GGGCGGCAGTCATGGTTTGTTTGGAAACAGCACAGCACAATCGAGAGGCCTGCACACTCCAGTGCAGCCA CTAAGTTCTTCTCCTGGTCTCCGGGCGCAAGTGCCTCCCCAGTTTATCTCCCCCCAGGTTTCTGCCTCAA TGCTCAAGCAGTTCCCCAACAGTGGCCTGAATCCAGGTCTCTTTAATGTGGGGCCCCAGCTATCTCCTCA ACAGATTGCCATGCTGAGCCAGCTTCCACAGATACCCCAGTTTCAGTTGGCATGTCAGCTTCTCCTGCAG CAGCAGCAGCAACAGCAGCAGTTGCTACAGAACCAGAGAAAGATTTCTCAAGCAGTGCGCCAGCAGCAAG AACAGCAGCTGGCAAGAATGGTGAGTGCTCTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGAGGCA GCCTAGCATGAAGCATTCACCTTCTCATCCTGTTGGGCCTAAGCCACATTTGGACAACATGGTACCCAAT GCGCTGAATGTGGGGCTCCCAGACCTTCCAACCAAAGGGCCAATTCCTGGATATGGTTCTGGCTTCAGCT CTGGTGGCATGGACTATGGTATGGTTGGTGGCAAGGAGGCTGGGACCGAGTCTCGCTTCAAACAGTGGAC CTCAATGATGGAAGGGCTGCCATCTGTGGCCACACAAGAAGCCACCATGCACAAAAACGGCGCTATAGTG GCCCCTGGTAAGACCCGAGGAGGTTCACCATACAACCAGTTTGATATAATCCCAGGTGACACACTGGGTG GCCATACGGGTCCTGCTGGTGATAGCTGGTTACCTGCCAAATCTCCACCGACTAATAAAATCGGAAGTAA ATCCAGCAATGCCAGTTGGCCTCCAGAATTCCAACCAGGAGTGCCATGGAAAGGTATCCAAAATATTGAC CCTGAATCTGACCCCTATGTCACCCCAGGAAGTGTGCTAGGGGGTACAACCACATCTCCCATTGTAGATA CTGACCACCAACTGCTGCGGGATAACACCACAGGGTCTAATTCCTCCCTCAACACCTCGCTGCCTTCACC TGGTGCCTGGCCCTACAGTGCCTCTGACAACTCCTTTACCAACGTTCATAGCACTTCAGCAAAGTTCCCT GATTATAAATCCACGTGGTCCCCAGATCCCATAGGACACAACCCCACTCATCTCTCCAATAAGATGTGGA AAAATCACATCTCCTCCAGGAACACTACACCGCTGACCCGCCCACCTCCTGGCCTGACCAACCCCAAACC GGCATCTCCTTGGAGCAGCACAGCACCGCGATCGGTCAGGGGGTGGGGGACACAGGACTCCCGGATTGCC TCGGCCTCTACCTGGAGTGATGGTGGCTCTGTCCGTCCTAGTTACTGGCTGGTTCTCCACAATCTCACCC CACAGATTGATGGGTCAACCCTGAGAACGATCTGCATGCAGCATGGCCCACTGCTGACATTCCATCTGAA CCTAACCCAGGGCACTGCCCTGATCCGATACAGCACCAAACAAGAGGCAGCCAAGGCCCAGACTGCACTG CACATGTGTGTGTTGGGAAACACTACCATCCTGGCCGAGTTTGCCACTGAGGATGAAGTCAGCCGCTTTC TGGCTCAAGCTCAGCCCCCTACGCCTGCAGCCACCCCGAGTGCACCTGCCACAGGGTGGCAGTCCCTGGA GACCAGCCAGAACCAAGCAGACCCCGTTGGACCTGCGCTGAACCTTTTCGGTGGGTCCACCGGGCTCGGG CAGTGGAGCAGCAGCGCTGGTGGCAGCAGTGGGGCCGATCTTGCCGGCACTTCCTTGTGGGGCCCCCCAA ACTATTCTTCTAGCTTGTGGGGAGTCCCGACGGTGGAAGATCCCCATAGGATGGGCAGCCCTGCTCCTTT ACTACCTGGTGACCTTCTGGGAGGAGGGTCGGATTCAATCTGA
Translation (1810 aa): MQTNEGEVEEESSSQVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKKKEATQKVTE QKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVL LKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNNAQVTGALLQSESGTAPESTLGGAAASNYANSTWGPGA SSNSGASPNPIHIWDKVIVDGSDMEEWPCIASKDTESSSENTTDNNSASNPGSEKSSLPGSTTSNKGKGS QCQAASSGNECNLGVWKSDPKAKSVQPPNSTSDSNNGLGNWRSTSGQDRIGPGSGFSNFNPNSNPSAWPA LVQEGTSRKGALETESSSSSAQVSTVGQASREQQSKMENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNL SSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTGSVGSWGAARGPSGTDTVSGQSNSGNNGNNGKDR EDSWKGASVPKPTGSKSDSWDNNNRSTGGSWNFGPQDNNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIG EWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGRSSSSAGSEVGGQSTGSNHKAGSSDSHNSGRRSY RPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQTKNS GGWGDAPSQSNQMKSGWGELSASTEWKDPKSTGGWNDYKNNNSSNWGGGRADEKTPSSWNESSCKDQGWG GGRQPNQGWTSGKNGWGEEVDQVKNNNWESSANKPVSGWGEGGQNEIGTWGNGGNTNLASKGGWEDCKRS PAWNETGRQPNSWNKQHQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPTTPKDDEPSGWE EPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREPNLPTPMTGKSASVWSKSTPPAPD NGTSAWGEPNESSPGWGEMDDAGASTTGWGNTPANAPNAMKPNSKSMQDGWGESDGPVTGARHPSWEEED DGGVWNTAGSQGSTSSHNSASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLS VDKKFDVDKRTMNLGDFNDIMRKDRPGFRPPNSKDLGTTDSGPYFEKGGSHGLFGNSTAQSRGLHTPVQP LSSSPGLRAQVPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQ QQQQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQQQQRQPSMKHSPSHPVGPKPHLDNMVPN ALNVGLPDLPTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEATMHKNGAIV APGKTRGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNID PESDPYVTPGSVLGGTTTSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFP DYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLTRPPPGLTNPKPASPWSSTAPRSVRGWGTQDSRIA SASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTAL HMCVLGNTTILAEFATEDEVSRFLAQAQPPTPAATPSAPATGWQSLETSQNQADPVGPALNLFGGSTGLG QWSSSAGGSSGADLAGTSLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI
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