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Report for CCDS37236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37236.1 Public Mus musculus 15 Nckap1l 23 108 98 CCDS HistoryNCBI Gene:105855Re-query CCDS DB by CCDS ID:37236.1Re-query CCDS DB by GeneID:105855See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047405.8 ENSMUSP00000035400.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047405.8Link to Ensembl Protein Viewer:ENSMUSP00000035400.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047405Re-query CCDS DB by Protein ID:ENSMUSP00000035400
Original member Current member NCBI NM_153505.4 NP_705725.1 Accepted alive Link to Nucleotide Sequence:NM_153505.4Link to Protein Sequence:NP_705725.1Re-query CCDS DB by Nucleotide ID:NM_153505Re-query CCDS DB by Protein ID:NP_705725Link to BLAST:NP_705725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705725.1 1134 Q8K1X4 1134 100% 0 0

Chromosomal Locations for CCDS 37236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103453880 103453981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103454971 103455081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103455840 103455932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103460185 103460241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103461539 103461681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103462502 103462592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103462680 103462817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103464366 103464414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103464506 103464662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103471229 103471285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103471527 103471623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103472768 103472877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103473039 103473171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103473517 103473598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103473800 103473858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103474053 103474198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103475602 103475734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103475978 103476097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103478278 103478423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103478724 103478855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103481960 103482178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103483515 103483645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103486332 103486429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103486546 103486639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103486793 103486875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103487109 103487189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103489992 103490085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103490911 103491027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103491466 103491575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103493221 103493310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103497412 103497543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGTCTTTGACCTCTGCCTATCAGCTTAAATTAGCAGAGAAGCTCACGATCCTGAATGACCGAGGACAGG
GAGTTCTCATCCGCATGTACAACATCAAGAAGACCTGTTCAGATTCAAAATCCAAGCCACCTTTTTTACT
GGAAAAGTCCATGGAATCATGTCTCAAGTACATCAACAAGAAGTTTCCCAACATAGATGTCCGAAATAGC
ACGCAACATTTAGGACCAGTGCATCGTGAAAAAGCTGAGATAATTAGATTCCTCACTAACTATTACCAGT
CATTTGTGGATGTCATGGAATTTCGGGATCATGTATATGAACTTCTCAACACCATTGATGCCTGCCAGTG
TCATTTTGATATTAATCTCAACTTTGACTTCACTCGGAGCTACCTGGACTTAATTGTGACGTACACCTCA
GTCATTTTACTCCTGTCACGGATTGAGGACCGCAGGATACTCATTGGCATGTACAACTGTGCCCATGAGA
TGCTGCATGGGCACAGTGACCCCAGTTTTGCTCGCCTGGGCCAGATGGTATTAGAGTATGACCATCCTCT
GAAGAAGCTGACAGAAGAATTTGGACCTCACACAAAGGCTGTGAGTGGAGCCCTGCTCTCTCTGCACTTC
CTCTTTGTTCGGAGGAACCAGGGAGCTGAGCAGTGGCGCAGCGCCCAGCTTCTAAGCCTCATCAGCAGCC
CCCCGGCCATGATTAACCCTGCTAATTCAGACACAATGGCCTGTGAGTATCTGTCCGTGGAAGTGATGGA
GCGATGGATCATAATTGGGTTTCTTCTTTGCCATGGGTGCCTCAACTCCAACAGCCAGTGCCAGAAGCTG
TGGAAGCTGTGTCTGGAGGGTTCCCTGTACATCACGCTCATCCGGGAAGATGTGCTGCAAGTGCACAAGG
TCACCGAGGACCTGTTCAGCAGTTTGAAAGGGTACAGTAAGCGAGTGGCAGACATCAAGGAGAGCAAGGA
ACACGCCATTACAAACAGTGGCCAGTTTCACTGTCAACGCCGGCAGTTTCTGCGGACAGCTGTGAAGGAG
TTGGAGACTGTGTTAAATGATGAACCAGGCCTGCTTGGTCCTAAGGCCCTTTTTGCTTTCATGGCCCTGT
CTTTCATTCGTGATGAGGTCACTTGGCTGGTTCGCCATACAGAAAATGTCACCAAGACTAAGACACCCGA
AGACTATGCTGACTCGAGCATTGCAGAGCTTCTGTTCCTGTTGGAGGAGATCAGGGCTCTGGTCAGAAGA
CACATCAAAGTTATTCAGCAGTACCACCTCCAGTACCTGGCCAGATTTGATGTCCTTGTGCTTAGTGACA
TCATTCAGAATCTGTCCGTGTGTCCAGAGGAGGAGTCTGTCATTATGTCCTCATTTGTTAGTATACTGTC
CTCTCTGAATCTCAAGCAAGTTGATAATGAAGAGAAATTTGACTTTTCTGGATTAAGGCTGGATTGGTTT
CGCCTACAGGCATATACCAGCGTGTCGAAGGCACCTTTGCACCTGCATGAGAACCCTGACCTAGCCAAGG
TCATGAACCTCATCATCTTTCACTCCCAGATGTTGGACTCAGTAGAGAAAATGCTGGTGGAAACCTCTGA
CCTTTCTACTTTCTGCTTTCATCTCCGTACCTTTGAGAAGATGTTTGCTACGACCCTGGAGGAACCAACC
ATGCTTCGCTACACCATTGCCTTCCCCCTGATTTGTGCTCATTTTGTCCACTGCGTTCATGAAATGTGCC
CAGAGGAGTACCCTCACCTGAAGAACCATGGTCTTCACCACTGCAACTCCTTCCTGGAAGATCTGGCCAA
GCAGACCAGCAACTGTGTGCTTGAGATATGTGCGGAACAGCGGAACCTGAATGAACAGCTTCTACCTAAG
CACTGTGCCACCACCATCAGCAAAGCCAAGAATAAGAAGTCCATGAAGCAGAGGCAGGCTCCCAGGAAAG
GAGAGCCTGAGAGGGACAAGCCAGGAGCAGAGAGTCATCGGAAGAACCGCAGCCTTGTCACTAACATGGA
CAAACTACATCTAAACTTGACTGAATTGGCACTGGCAATGAATCATGTGCACAGTTTCTCTGTGTTTGAA
CACACCATCTTCCCATCTGAGTATCTCAGCAGTCACCTGGAGGCCAGGCTTAACAGAGCCATCGTGACTT
TGGCTGGCTACAATGCCACAACCCAGGAGATCCTTAGGCCTTCTGAGCTGCTGGCAGGAGTCAAAGCATA
CATCAGTTTCATCCAGTCATTGGCACAGTTTTTGGGTGCAGATGCTTCCAGAATCGTTCGCAATGCCCTC
CTGCAGCAGACACAGCCACTGGACTCATCTGGCGAGCAGACTGTCACCACTCTCTACACAAACTGGTACC
TAGAAAGTCTCCTTAGACAGGCGAGCAGTGGAGCCATTGTCCTCTCCCCAGCCATGCAGGCCTTCATCAG
CCTTCCCCGAGATGGAGAGCAGAACTTCAGTGCTGAGGAGTTCTCGGACATCTCTGAGATGCGAGCCTTG
GCTGAAATTCTTGGTCCCTATGGCATGAAGTTCCTGAGTGAAAACCTGATGTGGCATGTGACCTCTCAGA
TTGTGGAGCTGAAGAAGCTTGTGGTGGAAAACATGGATATTCTGGTCCAGATCAGATCCAACTTCAGCAA
GCCAGAATTAATGGCATCTCTGCTGCCCCAGCTGACAGGAGCTGAAAATGTGCTGAAACGAATGACCATC
ATTGGGGTGATTCTCAGTTTTAGGGCCATGGCCCAAGAGGGACTTCAGGAGGTTTTTTCTGCCCACTGCC
CTTTTCTCATGGGCCCCATTGAGTGCCTGAAGGAGTTTGTCACCCCTGACACAGACATTAAGGTCACCCT
GAGTGTCTTTGAGCTGGCATGTGCTGCAGGGGTGAGCTGTGACATTGACCCAGCCTTGGTAGCTGCCATT
GCCAATCTGAAAGCTGATAACTCATCCCCTGAAGAAGAGTATAAGGTGGCATGCCTACTCTTGATCTTTC
TTGCTGTTTCCCTCCCACTCCTTGCCACTGACCCGTCTTCCTTCTTCAGCATTGAGAAAGATGGCTACAA
CAACAACATCCACTGTTTGACCAAAGCCATCATTCAGGTGTCTGCTGCCCTCTTCACTCTGTACAACAAG
AACATTGAAACGCACCTCAAAGAGTTTCTGGTGGTGGCCTCTGTCAGCCTCTTGCAGCTGGGCCAGGAGA
CTGACAAGCTCAAAACCAGAAATCGTGAATCCATTTCTCTGCTCATGCGCTTGGTGGTGGAGGAGTCACC
CTTCTTGACCCTGGACATGCTGGAGTCCTGTTTCCCTTACGTTCTGCTACGCAATGCCTATCGGGAGGTT
TCCCGGGCCTTCTACTTGAACCGTCTGCCAGCCAGTTCCCACTGA

Translation (1134 aa):
MSLTSAYQLKLAEKLTILNDRGQGVLIRMYNIKKTCSDSKSKPPFLLEKSMESCLKYINKKFPNIDVRNS
TQHLGPVHREKAEIIRFLTNYYQSFVDVMEFRDHVYELLNTIDACQCHFDINLNFDFTRSYLDLIVTYTS
VILLLSRIEDRRILIGMYNCAHEMLHGHSDPSFARLGQMVLEYDHPLKKLTEEFGPHTKAVSGALLSLHF
LFVRRNQGAEQWRSAQLLSLISSPPAMINPANSDTMACEYLSVEVMERWIIIGFLLCHGCLNSNSQCQKL
WKLCLEGSLYITLIREDVLQVHKVTEDLFSSLKGYSKRVADIKESKEHAITNSGQFHCQRRQFLRTAVKE
LETVLNDEPGLLGPKALFAFMALSFIRDEVTWLVRHTENVTKTKTPEDYADSSIAELLFLLEEIRALVRR
HIKVIQQYHLQYLARFDVLVLSDIIQNLSVCPEEESVIMSSFVSILSSLNLKQVDNEEKFDFSGLRLDWF
RLQAYTSVSKAPLHLHENPDLAKVMNLIIFHSQMLDSVEKMLVETSDLSTFCFHLRTFEKMFATTLEEPT
MLRYTIAFPLICAHFVHCVHEMCPEEYPHLKNHGLHHCNSFLEDLAKQTSNCVLEICAEQRNLNEQLLPK
HCATTISKAKNKKSMKQRQAPRKGEPERDKPGAESHRKNRSLVTNMDKLHLNLTELALAMNHVHSFSVFE
HTIFPSEYLSSHLEARLNRAIVTLAGYNATTQEILRPSELLAGVKAYISFIQSLAQFLGADASRIVRNAL
LQQTQPLDSSGEQTVTTLYTNWYLESLLRQASSGAIVLSPAMQAFISLPRDGEQNFSAEEFSDISEMRAL
AEILGPYGMKFLSENLMWHVTSQIVELKKLVVENMDILVQIRSNFSKPELMASLLPQLTGAENVLKRMTI
IGVILSFRAMAQEGLQEVFSAHCPFLMGPIECLKEFVTPDTDIKVTLSVFELACAAGVSCDIDPALVAAI
ANLKADNSSPEEEYKVACLLLIFLAVSLPLLATDPSSFFSIEKDGYNNNIHCLTKAIIQVSAALFTLYNK
NIETHLKEFLVVASVSLLQLGQETDKLKTRNRESISLLMRLVVEESPFLTLDMLESCFPYVLLRNAYREV
SRAFYLNRLPASSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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