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Report for CCDS37376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37376.1 Public Mus musculus 16 Robo1 23 108 98 CCDS HistoryNCBI Gene:19876Re-query CCDS DB by CCDS ID:37376.1Re-query CCDS DB by GeneID:19876See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023600.7 ENSMUSP00000023600.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023600.7Link to Ensembl Protein Viewer:ENSMUSP00000023600.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023600Re-query CCDS DB by Protein ID:ENSMUSP00000023600
Original member NCBI NM_019413.2 NP_062286.2 Updated not alive Link to Nucleotide Sequence:NM_019413.2Link to Protein Sequence:NP_062286.2Re-query CCDS DB by Nucleotide ID:NM_019413Re-query CCDS DB by Protein ID:NP_062286
Current member NCBI NM_019413.3 NP_062286.2 Accepted alive Link to Nucleotide Sequence:NM_019413.3Link to Protein Sequence:NP_062286.2Re-query CCDS DB by Nucleotide ID:NM_019413Re-query CCDS DB by Protein ID:NP_062286Link to BLAST:NP_062286.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062286.2 1612 O89026 1612 99.6278% 0 6

Chromosomal Locations for CCDS 37376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 72664140 72664194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72742126 72742452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72904630 72904787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72933213 72933333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72933674 72933812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72935659 72935786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72960081 72960205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72962154 72962325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72970167 72970372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72971980 72972061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72972208 72972376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72972471 72972637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72977686 72977807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72978560 72978791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72979845 72979966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72983709 72983880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72989599 72989796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72993667 72993693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72995117 72995159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73001919 73002073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73004410 73004745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73006824 73006931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73009612 73009756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73012875 73013123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73024132 73024538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73027757 73027909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73035659 73035967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73042991 73043187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 73044348 73044362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4839 nt):
ATGATCGCGGAGCCTGCTCGCTTTTACCTCTTTGGATTAATATGTCTCTGTTCAGGCTCCCGTCTTCGTC
AGGAAGATTTTCCACCCCGCATTGTTGAACACCCTTCAGACCTGATCGTCTCCAAAGGAGAACCTGCCAC
TCTGAACTGTAAAGCCGAAGGCCGCCCCACCCCGACGATAGAATGGTACAAAGGTGGGGAAAGAGTGGAG
ACGGACAAAGATGACCCGCGCTCACACCGGATGCTGCTGCCAAGCGGGTCTTTATTTTTCTTACGCATAG
TCCATGGACGGAAGAGTAGGCCCGACGAAGGGGTCTACATCTGTGTGGCTAGGAATTACCTCGGAGAGGC
TGTGAGCCACAACGCATCGCTGGAGGTAGCTATACTACGGGATGACTTCAGACAAAACCCTTCAGATGTC
ATGGTGGCAGTAGGCGAACCTGCAGTCATGGAATGCCAGCCTCCACGGGGCCATCCAGAGCCCACCATCT
CCTGGAAAAAGGATGGCTCACCCCTGGATGATAAAGATGAAAGAATCACTATACGAGGAGGAAAACTCAT
GATCACTTATACGCGTAAAAGCGATGCTGGCAAGTATGTTTGCGTTGGCACCAACATGGTGGGGGAACGG
GAGAGTGAAGTCGCAGAGCTAACCGTTTTAGAGAGACCATCGTTTGTGAAGAGACCCAGTAATTTGGCAG
TGACTGTGGATGACAGTGCAGAATTTAAATGTGAGGCCCGAGGAGACCCTGTGCCTACAGTTCGATGGAG
GAAAGATGACGGAGAGCTGCCCAAATCCAGATATGAAATCCGAGATGATCATACTTTGAAAATTCGGAAG
GTGACTGCTGGCGACATGGGATCATACACTTGTGTGGCAGAAAATATGGTCGGGAAAGCTGAAGCTTCCG
CTACTTTGACAGTTCAAGAGCCGCCACATTTCGTTGTAAAACCTCGGGACCAGGTGGTTGCCTTGGGAAG
AACTGTGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAACCAGCTATCTTTTGGAGGAGAGAGGGGAGT
CAGAATCTACTTTTCTCCTACCAGCCTCCACAGTCCTCTAGCCGATTTTCAGTTTCGCAGACAGGAGACC
TCACCATTACGAACGTCCAGCGGTCTGATGTCGGCTACTACATCTGTCAGACTTTAAATGTTGCTGGAAG
TATCATCACAAAGGCCTATTTGGAAGTTACTGATGTGATTGCAGACCGGCCTCCCCCAGTCATTCGGCAA
GGTCCTGTGAATCAGACTGTAGCAGTGGATGGCACTTTAATCCTCAGCTGTGTGGCCACAGGCAGTCCAG
CACCCACAATTCTGTGGAGGAAGGATGGAGTCCTTGTTTCAACCCAAGATTCTCGGATCAAACAGCTGGA
GAGTGGCGTGCTGCAGATCCGCTACGCTAAGCTGGGTGACACGGGTCGGTACACCTGCACCGCATCGACC
CCCAGCGGTGAGGCCACGTGGAGCGCTTACATCGAAGTCCAGGAATTTGGGGTTCCAGTTCAACCCCCAA
GACCCACCGACCCCAACTTAATCCCCAGCGCCCCCTCAAAGCCCGAAGTTACAGATGTCAGCAAAAACAC
GGTCACTTTATCGTGGCAGCCAAACTTGAACTCAGGAGCAACCCCAACATCTTATATTATAGAAGCCTTC
AGCCATGCATCTGGTAGCAGCTGGCAGACGGCGGCAGAAAATGTGAAAACAGAAACATTTGCCATCAAAG
GACTCAAACCTAACGCCATTTACCTTTTCCTGGTGAGGGCAGCAAATGCCTATGGAATTAGTGATCCAAG
CCAAATATCAGATCCAGTGAAAACGCAAGATGTCCCACCAACCAGCCAAGGGGTGGACCACAAGCAGGTC
CAAAGAGAACTGGGGAATGTTGTCTTACATCTGCACAACCCGACCATCCTTTCTTCCTCCTCAGTCGAAG
TGCACTGGACGGTGGACCAACAATCTCAATATATTCAAGGCTATAAAATTCTCTACCGCCCATCTGGAGC
CAGCCATGGTGAATCGGAGTGGTTAGTTTTTGAAGTGAGGACGCCAACGAAAAACAGCGTGGTGATCCCC
GATCTCAGAAAAGGCGTCAACTACGAGATTAAGGCTCGCCCATTTTTTAATGAGTTTCAAGGAGCAGACA
GTGAAATCAAATTTGCCAAAACCTTAGAAGAAGCACCAAGTGCCCCTCCCCGAAGTGTAACTGTATCCAA
GAATGATGGAAATGGGACTGCAATCCTGGTCACTTGGCAACCGCCTCCTGAAGACACACAAAATGGAATG
GTCCAAGAATATAAGGTTTGGTGTCTCGGTAATGAAACGAAGTATCACATAAACAAGACAGTCGATGGCT
CGACCTTCTCGGTGGTCATCCCCTCTCTGGTTCCTGGGATCCGATACAGTGTGGAGGTGGCAGCGAGCAC
TGGGGCGGGTCCCGGGGTGAAGAGCGAACCTCAGTTCATCCAGTTAGATTCTCACGGAAACCCCGTGTCT
CCCGAGGACCAAGTCAGCCTTGCTCAGCAGATCTCCGACGTGGTGAGGCAGCCGGCGTTCATTGCAGGCA
TTGGGGCAGCCTGTTGGATTATCCTCATGGTCTTCAGCATCTGGCTTTACAGACACCGCAAGAAGAGAAA
CGGACTCACCAGCACGTATGCGGGTATCCGGAAAGTCCCGTCCTTTACCTTCACGCCAACAGTAACTTAT
CAAAGAGGAGGCGAAGCCGTCAGCAGTGGAGGGAGGCCGGGACTCCTCAACATTAGTGAACCTGCCACGC
AGCCATGGCTGGCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAACTGCTGCAC
GGCCGGCAATGGCAACAGCGACAGCAACCTGACAACCTACAGTCGCCCAGCTGATTGTATAGCCAATTAT
AACAACCAACTGGATAACAAACAAACAAATCTGATGCTCCCTGAGTCAACTGTTTATGGTGATGTGGACC
TTAGTAACAAAATCAATGAGATGAAAACCTTCAATAGCCCAAATCTGAAGGACGGGCGTTTTGTCAATCC
ATCAGGGCAGCCCACTCCCTATGCCACCACTCAACTCATCCAGGCGAACCTCAGCAACAATATGAATAAT
GGCGCCGGGGACTCCAGCGAGAAGCACTGGAAGCCTCCGGGACAGCAGAAACCGGAAGTGGCACCAATTC
AGTATAACATCATGGAGCAAAACAAGCTGAACAAAGATTATCGGGCAAATGACACGATCCCTCCAACCAT
CCCATACAACCAGTCCTATGACCAGAACACAGGAGGGTCTTATAACAGCTCAGATCGGGGCAGTAGTACA
TCCGGGAGTCAAGGCCACAAGAAAGGGGCACGGACACCAAAGGCACCCAAGCAGGGTGGCATGAACTGGG
CAGACTTGCTGCCCCCTCCTCCGGCGCATCCTCCCCCACATAGCAACAGTGAAGAATACAACATGTCCGT
AGATGAAAGCTATGATCAAGAAATGCCCTGTCCAGTGCCACCTGCGCGGATGTATTTGCAACAGGATGAA
TTAGAGGAAGAGGAAGATGAAAGAGGCCCCACTCCCCCTGTCCGGGGGGCAGCTTCTTCTCCAGCTGCTG
TGTCCTACAGCCACCAATCCACGGCCACTCTCACCCCTTCTCCCCAGGAAGAGCTCCAGCCCATGTTACA
GGATTGTCCGGAGGACCTCGGGCACATGCCCCACCCACCAGACAGGAGGCGGCAGCCCGTGAGTCCTCCT
CCACCGCCACGGCCAATTTCCCCACCTCATACTTACGGCTACATTTCAGGACCCCTTGTCTCAGATATGG
ATACCGATGCCCCAGAAGAGGAGGAGGACGAAGCTGACATGGAAGTTGCCAAAATGCAGACCCGAAGGCT
GTTGTTACGTGGGCTGGAGCAGACCCCAGCATCCAGTGTTGGGGACCTTGAGAGCTCCGTCACTGGGTCC
ATGATCAATGGCTGGGGCTCAGCCTCGGAAGAGGACAACATTTCCAGTGGGCGCTCCAGTGTCAGTTCAT
CCGATGGCTCCTTTTTCACTGACGCTGATTTTGCCCAGGCAGTTGCTGCAGCTGCGGAGTATGCGGGCCT
GAAAGTGGCTCGCCGCCAAATGCAAGATGCTGCTGGCCGCCGCCACTTCCATGCCTCTCAGTGCCCAAGG
CCCACGAGTCCTGTGTCCACAGACAGCAACATGAGTGCTGTTGTGATCCAGAAAGCCAGACCCGCCAAGA
AGCAGAAACACCAGCCAGGACATCTGCGCAGGGAAGCCTACGCAGATGATCTTCCACCCCCTCCAGTGCC
ACCACCTGCTATAAAATCGCCCACTGTCCAGTCCAAGGCACAGCTGGAGGTACGGCCTGTCATGGTGCCA
AAACTCGCGTCTATAGAAGCAAGGACAGATAGATCGTCAGACAGAAAAGGAGGCAGTTACAAGGGGAGAG
AAGCTCTGGATGGAAGACAAGTCACTGACCTGCGAACAAATCCAAGTGACCCCAGAGAGGCACAGGAACA
GCCAAATGACGGGAAAGGCCGAGGAACAAAGGCAGCCAAGCGAGACCTTCCACCAGCAAAGACGCACCTC
GGCCAAGAGGATATTCTTCCGTACTGTAGACCTACTTTCCCAACGTCAAACAACCCTAGAGACCCCAGTT
CCTCCAGCTCTATGTCATCAAGAGGATCAGGGAGCCGACAAAGAGAGCAAGCAAATGTGGGCCGAAGGAA
TATGGCAGAAATGCAAGTACTTGGGGGATTTGAAAGAGGAGATGAGAATAATGAAGAATTAGAGGAAACT
GAAAGCTGA

Translation (1612 aa):
MIAEPARFYLFGLICLCSGSRLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVE
TDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYICVARNYLGEAVSHNASLEVAILRDDFRQNPSDV
MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGER
ESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRK
VTAGDMGSYTCVAENMVGKAEASATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGS
QNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQ
GPVNQTVAVDGTLILSCVATGSPAPTILWRKDGVLVSTQDSRIKQLESGVLQIRYAKLGDTGRYTCTAST
PSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSKNTVTLSWQPNLNSGATPTSYIIEAF
SHASGSSWQTAAENVKTETFAIKGLKPNAIYLFLVRAANAYGISDPSQISDPVKTQDVPPTSQGVDHKQV
QRELGNVVLHLHNPTILSSSSVEVHWTVDQQSQYIQGYKILYRPSGASHGESEWLVFEVRTPTKNSVVIP
DLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEEAPSAPPRSVTVSKNDGNGTAILVTWQPPPEDTQNGM
VQEYKVWCLGNETKYHINKTVDGSTFSVVIPSLVPGIRYSVEVAASTGAGPGVKSEPQFIQLDSHGNPVS
PEDQVSLAQQISDVVRQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLTSTYAGIRKVPSFTFTPTVTY
QRGGEAVSSGGRPGLLNISEPATQPWLADTWPNTGNNHNDCSINCCTAGNGNSDSNLTTYSRPADCIANY
NNQLDNKQTNLMLPESTVYGDVDLSNKINEMKTFNSPNLKDGRFVNPSGQPTPYATTQLIQANLSNNMNN
GAGDSSEKHWKPPGQQKPEVAPIQYNIMEQNKLNKDYRANDTIPPTIPYNQSYDQNTGGSYNSSDRGSST
SGSQGHKKGARTPKAPKQGGMNWADLLPPPPAHPPPHSNSEEYNMSVDESYDQEMPCPVPPARMYLQQDE
LEEEEDERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEDLGHMPHPPDRRRQPVSPP
PPPRPISPPHTYGYISGPLVSDMDTDAPEEEEDEADMEVAKMQTRRLLLRGLEQTPASSVGDLESSVTGS
MINGWGSASEEDNISSGRSSVSSSDGSFFTDADFAQAVAAAAEYAGLKVARRQMQDAAGRRHFHASQCPR
PTSPVSTDSNMSAVVIQKARPAKKQKHQPGHLRREAYADDLPPPPVPPPAIKSPTVQSKAQLEVRPVMVP
KLASIEARTDRSSDRKGGSYKGREALDGRQVTDLRTNPSDPREAQEQPNDGKGRGTKAAKRDLPPAKTHL
GQEDILPYCRPTFPTSNNPRDPSSSSSMSSRGSGSRQREQANVGRRNMAEMQVLGGFERGDENNEELEET
ES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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