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Report for CCDS37408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37408.1 Public Mus musculus 16 Kcnj6 23 108 98 CCDS HistoryNCBI Gene:16522Re-query CCDS DB by CCDS ID:37408.1Re-query CCDS DB by GeneID:16522See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095873.11 ENSMUSP00000093558.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095873.11Link to Ensembl Protein Viewer:ENSMUSP00000093558.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095873Re-query CCDS DB by Protein ID:ENSMUSP00000093558
Original member Current member NCBI NM_001025584.2 NP_001020755.1 Accepted alive Link to Nucleotide Sequence:NM_001025584.2Link to Protein Sequence:NP_001020755.1Re-query CCDS DB by Nucleotide ID:NM_001025584Re-query CCDS DB by Protein ID:NP_001020755Link to BLAST:NP_001020755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020755.1 414 P48542-2 414 99.0338% 0 4

Chromosomal Locations for CCDS 37408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94749266 94749270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94762398 94762685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94832299 94833219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94941181 94941211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGACAATGGCCAAGTTAACTGAATCCATGACTAACGTCTTGGAAGGCGATTCCATGGACCAGGATGTGG
AA
AGCCCAGTGGCCATTCACCAGCCAAAGTTGCCTAAGCAGGCCAGGGACGACCTGCCGAGACACATCAG
C
CGAGACAGGACCAAAAGGAAAATCCAGAGGTACGTGAGGAAGGATGGGAAGTGCAACGTTCACCACGGC
AAT
GTGCGGGAGACGTACCGATACCTGACGGACATCTTCACCACCCTGGTGGACCTGAAGTGGAGATTCA
AC
CTGTTGATCTTTGTCATGGTCTACACAGTGACGTGGCTTTTCTTTGGGATGATCTGGTGGCTGATTGC
G
TACATCCGGGGAGATATGGACCACATAGAGGACCCCTCGTGGACTCCTTGTGTCACCAACCTCAACGGG
TTT
GTCTCTGCTTTTTTATTCTCCATAGAGACAGAAACCACCATCGGTTATGGCTACCGGGTCATCACGG
AC
AAGTGCCCTGAGGGGATTATTCTCCTCTTAATCCAGTCCGTGTTGGGGTCCATTGTCAACGCCTTCAT
G
GTAGGATGTATGTTTGTGAAAATATCCCAACCCAAGAAGAGGGCAGAGACCCTGGTCTTTTCCACCCAC
GCG
GTGATCTCCATGCGGGATGGGAAACTGTGCTTGATGTTCCGGGTGGGGGACTTGAGGAATTCTCACA
TT
GTGGAGGCATCCATCAGAGCCAAGTTGATCAAGTCCAAACAGACTTCAGAGGGGGAGTTTATTCCCCT
C
AACCAGACTGATATCAACGTGGGGTACTACACAGGGGACGACCGGCTCTTTCTGGTGTCACCATTGATT
ATT
AGCCATGAAATTAACCAACAGAGTCCCTTCTGGGAGATCTCCAAAGCGCAGCTGCCTAAAGAGGAAC
TG
GAGATTGTGGTCATCCTGGAGGGAATGGTGGAAGCCACAGGAATGACGTGCCAAGCCCGAAGCTCCTA
C
ATCACCAGTGAGATCTTGTGGGGTTACCGGTTCACACCTGTCCTAACGCTGGAAGACGGGTTCTACGAA
GTT
GACTACAACAGCTTCCATGAGACCTATGAGACCAGCACCCCGTCCCTTAGTGCCAAAGAGCTAGCGG
AG
CTGGCTAACCGGGCAGAGCTGCCTCTGAGTTGGTCTGTGTCCAGCAAACTGAACCAACATGCAGAATT
G
GAGACAGAAGAGGAAGAGAAGAACCCGGAAGAACTGACGGAGAGGAATGGGTGA


Translation (414 aa):
MTMAKLTESMTNVLEGDSMDQDVESPVAIHQPKLPKQARDDLPRHISRDRTKRKIQRYVRKDGKCNVHHG
N
VRETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNG
F
VSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTH
A
VISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLI
I
SHEINQQSPFWEISKAQLPKEELEIVVILEGMVEAT
GMTCQARSSYITSEILWGYRFTPVLTLEDGFYE
V
DYNSFHETYETSTPSLSAKELAELANRAELPLSWSVSSKLNQHAELETEEEEKNPEELTERN
G



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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