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Report for CCDS37419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37419.1 Public Mus musculus 16 Zbtb21 23 108 98 CCDS HistoryNCBI Gene:114565Re-query CCDS DB by CCDS ID:37419.1Re-query CCDS DB by GeneID:114565See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052089.8 ENSMUSP00000052127.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052089.8Link to Ensembl Protein Viewer:ENSMUSP00000052127.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052089Re-query CCDS DB by Protein ID:ENSMUSP00000052127
Original member Current member NCBI NM_001081685.2 NP_001075154.1 Accepted alive Link to Nucleotide Sequence:NM_001081685.2Link to Protein Sequence:NP_001075154.1Re-query CCDS DB by Nucleotide ID:NM_001081685Re-query CCDS DB by Protein ID:NP_001075154Link to BLAST:NP_001075154.1

Chromosomal Locations for CCDS 37419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97949881 97950869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97951470 97953093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97956758 97956829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGATGCACAGTGTACAGCGGGCTCACAAACACTCGGGAGAGGAAGAGAGAAGAAAGATGTGTGCTTGCC
AG
ATAAAGTGCAGGATGGAGGGACTGCTGCATTACATCAACCCAGCACATGCTATCTCTCTGCTCAGTGC
C
CTCAATGAGGAGCGCCTCAAGGGACAGCTGTGTGACGTGCTCCTGATTGTTGGGGACCAGAAATTCCGA
GCT
CATAAGAACGTCTTGGCTGCCAGCAGTGAGTACTTCCAGAGTTTATTCACGAATAAGGAGAACGAGG
CA
CAGACTGTCTTTCAGCTGGACTTCTGTGAGCCTGACGCTTTTGACAACGTTCTGAACTACATTTACTC
T
TCTTCCCTTTTTGTGGAGAAGGGCAGCCTTGCTGCTGTGCAGGAGCTGGGGTATAGCCTTGGTATCTCC
TTC
CTGACCAACATCGTTGCCAAAGCCCCTCAGGCTCCTTTTCCAGCCTGTCCCAACAGGAAAAGAGTGC
CA
GTGGAAGATGATGAAACCAGCTCTCAAAAGCGAAGTGTCATTGTGTGTCAGGGCAGAAGTGAAGTGCC
A
GGGAAAGCCAGTGGTCCAGCCATGCAGGACCTCAGCCATACTGCCCGGGCCTCCCCCAGTGCTTCAGTC
AAG
ACCACCATCAGTAAGCCACATGTGGCCAAGCCGCCAGAGCAGCTTCATAGTCTGCCCTTAACTGAAA
AG
AGCTGGACAAAGGATAGTGCTGCAGTATATGCAAAGTCTCTGGAACAGGCTGGGGCTTTGGATGATCC
T
AATAGGGGCAGTTTGGTAAAGAGAAATACAGTCCTGCCCCCAAAGCCTTCACAGGACAGGGAGGCCACA
GAT
GATAAACCAGGGGTGAGCAGCCAGCTTCCCAAGGGGAAAGCTATAGAGCTGGCTCTGAAGAGACCAC
GG
CCCCCTGTTCTGTCTCTTCATAGCTCATCAGAGACTCCATATCTCCTAAAAGAAACTAGCAAAGGAGG
C
GGTCAGGGAGAGGATAGGAACTTGCTCTACTACTCTAAGCTAGGGCTGGTGGTCCCTTCTGGTGGGCCT
GCT
TCTGCAAACCAGAGCATTGACAGAAGTGGCCCACTAGTGAAAAGCCTCCTCAGGCGGTCACTGTCTA
TG
GACAGCCAGGTTCCTGTTTACTCCCCCTCCATAGATTTGAAGTCATCCCAGGGATCATCCACAGCGGC
A
AATGAGGCACCGGGTAGTGTGTTCTGTTCGATGTCTCAAAAGTCATCTTTAAAAGATTGCAGTGAAAAA
AAA
GCTCTGGATGACAGGCCTCAAGTGCTCCAGCCTCATCGCCTCAGGTCCTTTAGTGCTTCCCAGTCAA
CA
GACAGGGAGGAAGCCTCCCCTGTGACTGAGGTACGCATTAAGACGGAACCCAGCAGCCCACTGTCAGA
C
CCCTCAGACATCATCCGGGTCACTGTGGGAGGAGACGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCA
GCA
GCAGCTACGAGAGACCTGCCCCTCAAAACAGAGGAAGACCAGAGAGATATGAGCAGACTCCCAGCAA
AG
AGAAGGTTCCAGACAGACAGAAGGTCACCCTTGAAGAAGGCAAAGGCAAATGAACACGGGCCTGCTGT
C
TCAGAAGAGAACTGTGAAGAGGGCAGGAGCCCTCCTTCCCTTGACAGCAACTTCCCAGATTCTGACTTA
AAC
AGAGAGGAGTTTGAGCAAGGCAACCACGAGCGCTTGTGCCGGAACGCCACCGTTTGCCCTTACTGCA
GC
CTCAGGTTCTTCTCTCCCGCACTGAAGCAGGAACATGAGGACAGGTGTGAGTACAAAAAGCTGACTTG
C
CTGGAGTGCATGCGCACCTTCAAGTCCTCCTTCAGCATCTGGCGGCACCAGGTAGAAGTGCATAACCAG
AAC
AACATGGCTTTAGCAGAGAACTTCGCCCTGGCCACCCTGGACCACAACGGTGAAGTGGCAGCCGCTT
CC
AGGCCTCAGACTGAGCCCAGCAAGGTAAACCATGTGGCCACTCCAAAAGAGGATACAGCATTTAGCGA
C
TCTTCAGAGCAAGTGAACTTTGATTCTGAGGATTCCTCCTGCCTCCCTGAAGACTTGAGTCTTTCAAAG
CAA
CTGAAAGTCCAAGTCAAAGAGGAGCCTGTGGAGGAGGCAGAGGAGGAGGCTCCTGAGGCTAGTGCAG
CT
CCCAGGGAGGCTGGCCCCAGCAAGGAGACCGGCCTATGGCCCTGTGAGAAATGCGGAAAGATGTTCAC
G
GCACACAAGCAGCTGGAGCGGCACCAGGAGCTGCTGTGTTCTGTGAAGCCCTTCATCTGCCACGTATGC
TAC
AAAGCCTTCCGTACCAACTTCCGACTCTGGAGTCACTTCCAGACCCACATGTCTCAGGCTACAGAGG
AG
CCTGTGCAGAAAGAATCAGAGGTGTGTCCTGTGCCCACAAACTCCCCCTCCCCACCACCTCTGCCACC
T
CCGCCACCCTTGCCCAAGATTCAGCCCCTGGAGCCAGACAGCCCCACAGGCCTGCCTGAGAACCCAACC
CCA
GCTACAGAGAAGCTGTTTGCACCCCAGGAGTCAGATACCCTCTTCTACCACGCCCCACCCCTTTCAG
CA
ATCACATTTAAAAGACAGTTCATGTGCAAGCTCTGCCATAGGACATTCAAGACGGCCTTCAGTCTTTG
G
AGTCATGAGCAGACACACAATTAA


Translation (894 aa):
MMHSVQRAHKHSGEEERRKMCACQIKCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFR
A
HKNVLAASSEYFQSLFTNKENEAQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGIS
F
LTNIVAKAPQAPFPACPNRKRVPVEDDETSSQKRSVIVCQGRSEVPGKASGPAMQDLSHTARASPSASV
K
TTISKPHVAKPPEQLHSLPLTEKSWTKDSAAVYAKSLEQAGALDDPNRGSLVKRNTVLPPKPSQDREAT
D
DKPGVSSQLPKGKAIELALKRPRPPVLSLHSSSETPYLLKETSKGGGQGEDRNLLYYSKLGLVVPSGGP
A
SANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCSMSQKSSLKDCSEK
K
ALDDRPQVLQPHRLRSFSASQSTDREEASPVTEVRIKTEPSSPLSDPSDIIRVTVGGDAAAAAVAAAAA
A
AATRDLPLKTEEDQRDMSRLPAKRRFQTDRRSPLKKAKANEHGPAVSEENCEEGRSPPSLDSNFPDSDL
N
REEF
EQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ
N
NMALAENFALATLDHNGEVAAASRPQTEPSKVNHVATPKEDTAFSDSSEQVNFDSEDSSCLPEDLSLSK
Q
LKVQVKEEPVEEAEEEAPEASAAPREAGPSKETGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVC
Y
KAFRTNFRLWSHFQTHMSQATEEPVQKESEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPT
P
ATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser