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Report for CCDS37423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37423.1 Public Mus musculus 17 Gtf2h5 23 108 98 CCDS HistoryNCBI Gene:66467Re-query CCDS DB by CCDS ID:37423.1Re-query CCDS DB by GeneID:66467See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039487.9 ENSMUSP00000040355.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039487.9Link to Ensembl Protein Viewer:ENSMUSP00000040355.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039487Re-query CCDS DB by Protein ID:ENSMUSP00000040355
Original member Current member EBI ENSMUST00000100955.2 ENSMUSP00000098515.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100955.2Link to Ensembl Protein Viewer:ENSMUSP00000098515.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100955Re-query CCDS DB by Protein ID:ENSMUSP00000098515
Original member Current member NCBI NM_001357804.1 NP_001344733.1 Accepted alive Link to Nucleotide Sequence:NM_001357804.1Link to Protein Sequence:NP_001344733.1Re-query CCDS DB by Nucleotide ID:NM_001357804Re-query CCDS DB by Protein ID:NP_001344733Link to BLAST:NP_001344733.1
Original member Current member NCBI NM_181392.3 NP_852057.2 Accepted alive Link to Nucleotide Sequence:NM_181392.3Link to Protein Sequence:NP_852057.2Re-query CCDS DB by Nucleotide ID:NM_181392Re-query CCDS DB by Protein ID:NP_852057Link to BLAST:NP_852057.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344733.1 71 Q8K2X8 71 100% 0 0
NP_852057.2 71 Q8K2X8 71 100% 0 0

Chromosomal Locations for CCDS 37423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6080840 6080874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6084472 6084652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (216 nt):
ATGGTCAACGTGCTGAAAGGGGTGCTTATAGAATGTGACCCTGCCATGAAGCAGTTCTTGCTGTACTTGG
ATGAGGCCAACGCCTTGGGGAAGAAGTTCATCATTCAGGACATTGATGACACGCACGTCTTCGTCATTGC
CGAGCTGGTCAACGTCCTCCAGGAGCGAGTAGGGGAACTGATGGACCAGAATGCCTTTTCTCTTACCCAG
AAGTGA

Translation (71 aa):
MVNVLKGVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQ
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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