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Report for CCDS37505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37505.1 Public Mus musculus 17 Rhot2 23 108 98 CCDS HistoryNCBI Gene:214952Re-query CCDS DB by CCDS ID:37505.1Re-query CCDS DB by GeneID:214952See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043897.15 ENSMUSP00000044639.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043897.15Link to Ensembl Protein Viewer:ENSMUSP00000044639.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000043897Re-query CCDS DB by Protein ID:ENSMUSP00000044639
Original member Current member NCBI NM_145999.3 NP_666111.1 Accepted alive Link to Nucleotide Sequence:NM_145999.3Link to Protein Sequence:NP_666111.1Re-query CCDS DB by Nucleotide ID:NM_145999Re-query CCDS DB by Protein ID:NP_666111Link to BLAST:NP_666111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666111.1 620 Q8JZN7 620 100% 0 0

Chromosomal Locations for CCDS 37505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25839368 25839494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25839689 25839891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25839985 25840107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25840255 25840335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25840438 25840568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25840651 25840751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25840836 25840978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25841052 25841136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25841362 25841482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25841559 25841667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25841757 25841855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25841990 25842091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25842180 25842288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25842366 25842418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25843107 25843160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25843941 25843984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25844089 25844170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25844255 25844313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25844400 25844436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGCGGCGCGATGTTCGCATCCTGCTGCTGGGCGAGGCCCAGGTGGGGAAGACGTCTCTGATCCTGTCGC
TGGTCGGCGAGGAGTTTCCCGAGGAGGTCCCTGCCCGCGCGGAGGAGATAACCATCCCCGCCGACGTCAC
CCCGGAGAAGGTGCCCACTCATATCGTGGATTACTCAGAAGCGGAGCAGACAGAGGAAGAACTTCAGGAG
GAGATCCACAAGGCAAATGTAGTGTGTGTGGTGTACGATGTGTCTGAGGAGACCACCATTGAGAAGATCC
GAACCAAGTGGATCCCGCTTGTGAATGGCAGGACGGCGACAGGGCCCAGGTTGCCCATCATCCTGGTGGG
CAATAAGTCTGACCTGCGGCCGGGGAGTACCATGGAGGCTGTGCTGCCCATCATGAGCCAGTTTCCTGAG
ATAGAGACCTGCGTGGAGTGTTCAGCCAAGCACTTGAGGAATATCTCAGAGCTGTTCTACTATGCCCAGA
AGGCTGTTCTGCATCCCACAGCCCCCCTTTATGACCCTGAGGCCAAACAGCTCAGGCCTGCATGCGCCCA
GGCGCTCACACGCATCTTCAGGCTGTCGGACCAGGACCGAGACCACGGGCTGAGCGACGAGGAACTCAAT
GCCTTCCAGAAGTCCTGCTTTGGCCATCCCCTGGCCCCACAGGCCCTGGAGGATGTGAAGAGGGTGGTGT
GCAAGAACGTGTCAGGTGGTGTGCAGAATGACCGGCTGACCCTGGAAGGCTTCCTCTTCCTGAACACACT
CTTCATCCAGCGTGGCCGGCACGAGACCACGTGGACCATCCTGCGGCGCTTTGGTTACAGTGACTCACTG
GAGCTAACGCCCGACTACCTCTATCCAGCGCTCCATGTCCCCCCTGGCTGCAGCACAGAGCTCAACCATC
GTGGCTACCAGTTTGTGCAGCGGATGTTCGAGAAGCATGACCAGGACCATGATGGTGTCCTCTCGCCCAC
GGAACTACAGAATCTCTTCAGTGTGTTCTCAGGTGCTCCATGGGGCCCTGAACTCTTACACACAGTCCCC
ACTCAGGCTGGCTGTCTGCCTTTGCATGGCTATCTCTGCCAGTGGACCCTCATGACCTACTTGGATGTCC
AGCAATGCCTTGCACACCTTGGCTACCTGGGTTACCCTACCCTCTGTGAACAGGACTCTCAGGCACAGGC
TATCACAGTTACCCGCGAGAAGAAGCTGGACCAGGAGAAAGGGCAGACACAGCGCAGCGTTCTCATGTGT
AAGGTGCTGGGAGCCCGAGGAGTGGGCAAGTCAGCCTTCTTGCAAGCCTTCCTTGGCAACAGCCTTGGGG
AAGCCAGGGACCCCCCTGAGAAATTCCCCCTGCATACCATCAATACAGTGCGGGTCAACGGGCAGGAGAA
GTACCTGATTCTGTGTGAAGTGAATGCTGACAGCCTGCTGGACACCTCTCTAGACACTACCTGTGATGTC
GCCTGCTTAATGTTTGACAGCAGTGATCCCAAGACCTTTGTACACTGTGCTACCATATACAAGCGTTATT
ACATGGATGGGCAGACCCCCTGCCTCTTTATTGCCTCCAAAGCTGATCTCCCTGAAGGTGTTGCCCCCCC
AGGGCTGTCACCCGCTGAGTTCTGCCGGAGGCACCGGCTGCCTGCCCCAGCTTCATTCTCCTGCTTGGGA
CCCGCAATGCCCAGCACAGATGTCTTTACCCAACTTGCTACCATGGCCACTTTCCCACACCTGGTGCACA
CAGAGCTGCACCCCACCTCCTTCTGGCTCCGAGGAGTGCTGGTGGCTGTCGGCACGGCTGTGGCTGCTGT
CCTTAGCTTCTCACTATACAGGGTCCTAGTGAAGAGCCGATGA

Translation (620 aa):
MRRDVRILLLGEAQVGKTSLILSLVGEEFPEEVPARAEEITIPADVTPEKVPTHIVDYSEAEQTEEELQE
EIHKANVVCVVYDVSEETTIEKIRTKWIPLVNGRTATGPRLPIILVGNKSDLRPGSTMEAVLPIMSQFPE
IETCVECSAKHLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDRDHGLSDEELN
AFQKSCFGHPLAPQALEDVKRVVCKNVSGGVQNDRLTLEGFLFLNTLFIQRGRHETTWTILRRFGYSDSL
ELTPDYLYPALHVPPGCSTELNHRGYQFVQRMFEKHDQDHDGVLSPTELQNLFSVFSGAPWGPELLHTVP
TQAGCLPLHGYLCQWTLMTYLDVQQCLAHLGYLGYPTLCEQDSQAQAITVTREKKLDQEKGQTQRSVLMC
KVLGARGVGKSAFLQAFLGNSLGEARDPPEKFPLHTINTVRVNGQEKYLILCEVNADSLLDTSLDTTCDV
ACLMFDSSDPKTFVHCATIYKRYYMDGQTPCLFIASKADLPEGVAPPGLSPAEFCRRHRLPAPASFSCLG
PAMPSTDVFTQLATMATFPHLVHTELHPTSFWLRGVLVAVGTAVAAVLSFSLYRVLVKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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