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Report for CCDS37579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37579.1 Public Mus musculus 17 H2-DMa 23 108 98 CCDS HistoryNCBI Gene:14998Re-query CCDS DB by CCDS ID:37579.1Re-query CCDS DB by GeneID:14998See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042121.10 ENSMUSP00000037088.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042121.10Link to Ensembl Protein Viewer:ENSMUSP00000037088.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042121Re-query CCDS DB by Protein ID:ENSMUSP00000037088
Original member Current member EBI ENSMUST00000236322.1 ENSMUSP00000157660.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236322.1Link to Ensembl Protein Viewer:ENSMUSP00000157660.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236322Re-query CCDS DB by Protein ID:ENSMUSP00000157660
Original member Current member NCBI NM_001360530.1 NP_001347459.1 Accepted alive Link to Nucleotide Sequence:NM_001360530.1Link to Protein Sequence:NP_001347459.1Re-query CCDS DB by Nucleotide ID:NM_001360530Re-query CCDS DB by Protein ID:NP_001347459Link to BLAST:NP_001347459.1
Original member Current member NCBI NM_010386.4 NP_034516.3 Accepted alive Link to Nucleotide Sequence:NM_010386.4Link to Protein Sequence:NP_034516.3Re-query CCDS DB by Nucleotide ID:NM_010386Re-query CCDS DB by Protein ID:NP_034516Link to BLAST:NP_034516.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347459.1 261 P28078 261 98.0843% 0 5
NP_034516.3 261 P28078 261 98.0843% 0 5

Chromosomal Locations for CCDS 37579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34135671 34135758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34137114 34137398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34137903 34138181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34138407 34138535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34138817 34138821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGAGCATGAGCAGAAGTCAGGAGCTGTGCTGCTGAGGCTGCTGCGCCTTCTGTGGCTGCTGCCCCACT
CCTGGGCGGTGCTCGAAGCATCTACACCAGTGTTCTGGGATGACCCACAGAACCACACATTCCGGCACAC
TCTATTCTGCCAGGACGGGATTCCCAACATAGGGCTCTCGGAGACCTATGACGAGGACGAACTCTTCTCC
TTCGACTTCTCCCAGAACACCAGAGTGCCCCGACTGCCTGACTTTGCAGAGTGGGCTCAGGGACAGGGGG
ATGCCTCTGCCATTGCATTTGACAAAAGCTTCTGCGAGATGTTGATGCGGGAAGTGAGCCCGAAGCTTGA
AGGTCAAATCCCAGTGTCCAGAGGTTTGCCTGTGGCAGAGGTATTCACACTGAAGCCCCTGGAGTTTGGC
AAGCCCAACACGTTGGTCTGTTTCATCAGCAACCTCTTTCCACCGACCCTGACCGTGAACTGGCAGCTTC
ACTCGGCCCCTGTGGAGGGAGCCAGCCCCACATCCATCTCAGCTGTCGATGGGCTGACCTTCCAGGCTTT
CTCTTATTTAAACTTCACACCGGAACCCTTTGACCTTTACTCCTGCACTGTGACACACGAGATTGACCGC
TACACGGCAATTGCCTATTGGGTACCCCAGAACGCCCTGCCTTCGGATCTCCTAGAGAATGCCCTGTGTG
GTGTGGCCTTTGGCCTCGGTGTGCTAGGCACCATCATGGGCATTGTCTTCTTCCTCTGCTCCCAGAGACC
GTGCTCAGGTGACTGA

Translation (261 aa):
MEHEQKSGAVLLRLLRLLWLLPHSWAVLEASTPVFWDDPQNHTFRHTLFCQDGIPNIGLSETYDEDELFS
FDFSQNTRVPRLPDFAEWAQGQGDASAIAFDKSFCEMLMREVSPKLEGQIPVSRGLPVAEVFTLKPLEFG
KPNTLVCFISNLFPPTLTVNWQLHSAPVEGASPTSISAVDGLTFQAFSYLNFTPEPFDLYSCTVTHEIDR
YTAIAYWVPQNALPSDLLENALCGVAFGLGVLGTIMGIVFFLCSQRPCSGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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