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Report for CCDS37589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37589.1 Public Mus musculus 17 Gpsm3 23 108 98 CCDS HistoryNCBI Gene:106512Re-query CCDS DB by CCDS ID:37589.1Re-query CCDS DB by GeneID:106512See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038244.14 ENSMUSP00000045911.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038244.14Link to Ensembl Protein Viewer:ENSMUSP00000045911.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038244Re-query CCDS DB by Protein ID:ENSMUSP00000045911
Original member Current member NCBI NM_134116.5 NP_598877.1 Accepted alive Link to Nucleotide Sequence:NM_134116.5Link to Protein Sequence:NP_598877.1Re-query CCDS DB by Nucleotide ID:NM_134116Re-query CCDS DB by Protein ID:NP_598877Link to BLAST:NP_598877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598877.1 159 Q3U1Z5-1 159 100% 0 0

Chromosomal Locations for CCDS 37589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34590222 34590260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34590461 34590563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34590742 34590941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34591170 34591307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGAGGCTGAAAGACCCCAGGAAGAAGATGGTGAACAGAGTCTCCCGCAGGATGATCAGGGATGGCCCC
CTGTGAATGCCACCGCTCGGCCTTGGAGATCTGCTCCTCCCTCCCCTCCTCCTCCTGGAACCCGACACAC
AGCCCTAGGGCCCCGTTCTGGCTCCCTGCTCTCCCTGCAGACTGAGCTCCTTCTGGACCTAGTGGCCGAA
GCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCCACCAAACCTAGCCC
CAGCCCCACCCCGGCTTCTTGAAGACAAAGAACAGCTCTACAGCACCATCCTTAGTCACCAGTGCCAGCG
GATTGAAGCCCAACGGTCTGACCCGCCCCTTCCCCCCGGGGGGCAGGAGCTTCTGGAGTTGCTGCTGAGA
GTTCAGGGTGGAGGTCGAATGGAGGAGCAGAGATCCCGGCCTCCTACACACACCTGCTGA

Translation (159 aa):
MEAERPQEEDGEQSLPQDDQGWPPVNATARPWRSAPPSPPPPGTRHTALGPRSGSLLSLQTELLLDLVAE
AQSRRLEEQRATFHTPEAPPNLAPAPPRLLEDKEQLYSTILSHQCQRIEAQRSDPPLPPGGQELLELLLR
VQGGGRMEEQRSRPPTHTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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