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Report for CCDS37671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37671.1 Public Mus musculus 17 Cntnap5c 23 108 98 CCDS HistoryNCBI Gene:620292Re-query CCDS DB by CCDS ID:37671.1Re-query CCDS DB by GeneID:620292See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076038.6 ENSMUSP00000075416.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076038.6Link to Ensembl Protein Viewer:ENSMUSP00000075416.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076038Re-query CCDS DB by Protein ID:ENSMUSP00000075416
Original member NCBI NM_001081653.2 NP_001075122.1 Updated not alive Link to Nucleotide Sequence:NM_001081653.2Link to Protein Sequence:NP_001075122.1Re-query CCDS DB by Nucleotide ID:NM_001081653Re-query CCDS DB by Protein ID:NP_001075122
Current member NCBI NM_001081653.3 NP_001075122.1 Accepted alive Link to Nucleotide Sequence:NM_001081653.3Link to Protein Sequence:NP_001075122.1Re-query CCDS DB by Nucleotide ID:NM_001081653Re-query CCDS DB by Protein ID:NP_001075122Link to BLAST:NP_001075122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075122.1 1305 Q0V8T7 1305 100% 0 0

Chromosomal Locations for CCDS 37671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57769570 57769651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57876383 57876487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57891900 57892093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58013816 58013963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58034845 58035048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58042427 58042611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58055572 58055712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58092213 58092477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58102093 58102242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58104597 58104768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58138613 58138719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58162178 58162297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58198856 58199056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58286742 58286898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58293895 58294022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58294218 58294388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58305498 58305716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58313677 58313916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58330119 58330343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58359191 58359321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58364164 58364248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58395117 58395335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58407668 58407739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58410146 58410342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3918 nt):
ATGGATTCTGTACCAAGACTGAATAGCGTTTTTACTTTGGTGCTCTCTGGCTTGTGGCATTTTGGATTAA
CAGCGACAAATTACAACTGTGATGACCCATTGACTTCCTTCCTCTCACTGAGGGCTTTCTCCAGCTCCTC
AGATCTCACTGGAAGGTCCAGCCCAGCTCAACTCAACTGGAGAATGGGAACTGGTGGTTGGTCCCCAGCA
GATTCTAATGCCCAGCAGTGGCTCCAAATGGACCTGGGAAACAGAGTGGAGATTACAGCTGTGGCTACCC
AGGGAAGATATGGGAGCTCTGACTGGGTGACAAGCTATCGCCTGATGTTCAGTGACACAGGGCACAACTG
GCAACAGTACACGCAGGAAGGCAGCATCTGGAGATTTGTAGGAAACATGAATGCTAACAGTGTGGTTCAC
CACAAACTGCTGAACTCTGTGAGAGCCCGCTTTGTTCGCTTTGTGCCCCTGGAGTGGAATCCAAATGGAA
AGATTGGCATGAGAGTAGAGGTCTATGGATGTTCCTACAGATCAGATGTAGCTGACTTTGATGGCTGGAG
CTCACTTCTCTACAGGTTCAACCAGAAGACAATGAGCACCCTCAAAGATGTGATCTCCCTTAAGTTCAAG
AGCATACAAAGGGATGGGGTTCTGTTCCATGGGGAAGGACAACGTGGAGACCATATCACCCTAGAGCTTC
AGAATGGCAGGCTAGCCCTATACCTGAACCTGGATGACAGCAAAGCCCAGGTCAGCAGCACTGCACCCTT
GGCAACTCTGGGTAGCCTTCTGGATGACCAGCACTGGCACTCAGTTCTCCTGGAGCGTGTGGGCAAGCAG
GCCAACTTCACTGTGGACAAGAACACACAGCACTTCCAGACCAAGGGTGAGACTGATGCCCTGGACATTG
ACTATGAGCTCAGTTTTGGAGGAATTCCAGTACCAAGCAAACCTGGGACCTTTTTAAAGAAAAACTTCCA
TGGCTGTATAGAAAACCTTTATTACAATGGAGTGAACATAATTGACTTGGCTAAAAGACGGAAGCATCAG
ATTTACTCAGGCAATGTCACCTTTTCCTGCTCAGAACCACAAACTGTCCCCATCACATTTGTCAACTCCA
GGAGCAGTTATTTGCTGTTGACTGGTACCCCCCAAATTGATGGACTGTCAGTGAGTTTCCAGTTTCGAAC
ATGGAATGAGGATGGTCTGCTTCTGTCCACAGAACTGTCTGAAGGCTCAGGAACCCTGCTGCTCATCCTG
GAGGGCGGGACTCTGAGGCTCCTGATTAAGAAATTGGCCAGACATGGAACTGAAATCTTCACAGGCAGTG
GCTTGAATGATGGCATGTGGCATTCTGTCAGCATCAGTGCCAGAAGAAATCGTGTTACTCTCACACTGGA
TAATGATGCTGCATCCCTGCCTCCAGACACCTCCTGGCTGCAGATATATTCTGGAAATAGCTACTACTTT
GGAGGGTGCCCTGACAATCTCACTGATTCCCAATGCTTAAACCCGATTAAGGCTTTCCAAGGCTGCATGA
GGCTCATCTTTATTGATAACCAGCCCAAGGATCTTATTTCAGTTCAGCAAGGCTCCCTGGGGAGTTTTAG
TGATTTACACATTGATCTGTGTAGCATCAAAGACAGGTGTTTGCCAAACTACTGTGAACATGGAGGACAA
TGTGCGCAAACCTGGACTAACTTCTACTGCAACTGCAGTGACACTGGTTACACAGGAGCCACCTGTCATG
ACTCCATCTATGAGCAGTCCTGTGAGGTGTACAGACACAGAGGGAAAACTGCTGAGTTCTTCTATGTTGA
CTCTGATGGCAGCGGGCCACTGGGACCACTCCAGGTGTTCTGCAATATTACTGAAGACAAGATCTGGATG
ACAGTTCAGCACAACAACACAGGGCTGACTTGGGTACAGGGTTCTAACCCTGAGAAGCCCTATGCCATGA
CCTTAAACTATGGTGGGAGTCTGGAGCAACTGGAGGCTCTGATTGATGGCTCAGAGCACTGTGAACAGGA
AGTGACATACTACTGCAAGAGATCCCGCCTGCTTAACACACCAGATGGAGTCCCATTCACCTGGTGGATT
GGGAGGTCCAATGAAAAGCATCCTTATTGGGGAGGCTCTCTTCCTGGAGTCCAGCAGTGTGGATGTGGGC
TGGAAGAGAGCTGCCTGGACATTCGACATTTTTGCAATTGTGATGCTGACACAGATGAATGGACAAACGA
TACTGGTTATCTGTCTTTCAAAGATCACTTGCCCGTAACTCAGATAATTATTACTGATACCAACAGATCA
AAATCAGAAGCTGCTTGGAGAATTGGCCCCTTGCGTTGCTATGGTGACCGACACTTCTGGAATGCTGTCT
CATTTTCTACCGAAGCCTCTTTCCTTCACTTTCCTACCTTCCGTGTGGAATTCAGCGCTGACATTTTCTT
CTTTTTTAAAACCACTGCTTTATCAGGAGTTTTCCTAGAAATCCTTGGCATTAAAGACTTCCTCCGACTT
GAAATGAGCTCTCCTTCTGAGGTCATATTTGCCATTGATGTTGGAAATGGTCCCATTGATCTCCTCGTCC
AGTCTCCTTATCCTCTGAATGACAACCAATGGCATTATATCCGGGCTGAGAGAAACCTCAAGGAGACCTC
ATTGCAGGTGGACAATCTTCCACAGAGTATGAGGGAGGCCTCAGAGGAAGGCCATTTCCAATTTCAGCTG
AATAGCCAGTTGTTTGTAGGAGGAAAATCATCAAGACAAAAAGGCTTTTTTGGATGCATCCGTTCCTTAC
ACTTGAATGGGCAGAACATAGACCTGGAGGAGAGAGCAAAGGTCACATCTGGAGTGAGACCTGGATGTCC
AGGTCACTGCAGCAGTTATGGAAGAAATTGCCAAAATGGGGGCAAGTGTGTGGAGAAGCATATTGGCTAC
TCATGTGACTGTACCAACTCACCATATGAAGGACCTTTCTGTCAGAAAGAGATTTCAGCTCTTTTTGATT
CTGACACCTCTGTTACATACATGTTTCAAGAACCATACTCAGTGACCAAGAACACAAACCTCTCATCTTC
TGCTATCTACACAGATACAGCTCCATCCAAGGAAATCATCATGCTGAGTTTCATGACAGCACAAGCCCCC
ACCCTCTTGCTCTACCTCAATTTCTCTTCTCAGAATTTTCTGGCTATTTTGCTCTCCTGGAATGGAAGTT
TACAGATTCACTATCAACTAAGCAAGGAAGAAAGCCATGTGTTCACCATCAACACAGAGAATCTGGCCAA
TAGAAGAGTGCACCAGGTGAAAATGAGCCGTGATGGTCCAGAACTTTCTATTCAGATGGACCAGCAACTC
TTCAGCTATACTTTCTCACTAGAATCTGAGTTCCAGAGAGCAAGGTCGCTCGTCCTAGGCAAAGTCACAG
AGACTCTTGGGTTGGATCCAGAAGTTGCTAGAGCAAACACCTTGGGTTTTGTTGGATGTCTTTCTTCAGT
CCAATACAATCATATAACACCATTGAAGGCAGCCCTTCGCCATGCCAGCATTTCACCTGTGACTGTTCAA
AGGACTTTGACAGAATCCAGCTGTGTCTCCATGGTGGACTCTGATGCGAATGCAGTGACCACCGTGTATT
CTTCAACAGATCCATTTGGAGAGAGAGATGAGCGTGAACCGCTCACAAATGCAGTCCCAAGTGACTTGGC
AGTCATTGGAGGCATCATAGCAGTGGTGACATTCATCAGTTTTTCTGTCATTGGAATCATGACCCACTTT
TTCTATCAGCACAAGCGGTCACACTATGCCAGTCAAATGAAGGAGAAGGAATACCCAGAGAATGTGGACA
GTTCCTCTAGAAATGACATTGACTTGCAAAACACAACCAGGGAGTGCAAGCAGGAAGACTTCATATGA

Translation (1305 aa):
MDSVPRLNSVFTLVLSGLWHFGLTATNYNCDDPLTSFLSLRAFSSSSDLTGRSSPAQLNWRMGTGGWSPA
DSNAQQWLQMDLGNRVEITAVATQGRYGSSDWVTSYRLMFSDTGHNWQQYTQEGSIWRFVGNMNANSVVH
HKLLNSVRARFVRFVPLEWNPNGKIGMRVEVYGCSYRSDVADFDGWSSLLYRFNQKTMSTLKDVISLKFK
SIQRDGVLFHGEGQRGDHITLELQNGRLALYLNLDDSKAQVSSTAPLATLGSLLDDQHWHSVLLERVGKQ
ANFTVDKNTQHFQTKGETDALDIDYELSFGGIPVPSKPGTFLKKNFHGCIENLYYNGVNIIDLAKRRKHQ
IYSGNVTFSCSEPQTVPITFVNSRSSYLLLTGTPQIDGLSVSFQFRTWNEDGLLLSTELSEGSGTLLLIL
EGGTLRLLIKKLARHGTEIFTGSGLNDGMWHSVSISARRNRVTLTLDNDAASLPPDTSWLQIYSGNSYYF
GGCPDNLTDSQCLNPIKAFQGCMRLIFIDNQPKDLISVQQGSLGSFSDLHIDLCSIKDRCLPNYCEHGGQ
CAQTWTNFYCNCSDTGYTGATCHDSIYEQSCEVYRHRGKTAEFFYVDSDGSGPLGPLQVFCNITEDKIWM
TVQHNNTGLTWVQGSNPEKPYAMTLNYGGSLEQLEALIDGSEHCEQEVTYYCKRSRLLNTPDGVPFTWWI
GRSNEKHPYWGGSLPGVQQCGCGLEESCLDIRHFCNCDADTDEWTNDTGYLSFKDHLPVTQIIITDTNRS
KSEAAWRIGPLRCYGDRHFWNAVSFSTEASFLHFPTFRVEFSADIFFFFKTTALSGVFLEILGIKDFLRL
EMSSPSEVIFAIDVGNGPIDLLVQSPYPLNDNQWHYIRAERNLKETSLQVDNLPQSMREASEEGHFQFQL
NSQLFVGGKSSRQKGFFGCIRSLHLNGQNIDLEERAKVTSGVRPGCPGHCSSYGRNCQNGGKCVEKHIGY
SCDCTNSPYEGPFCQKEISALFDSDTSVTYMFQEPYSVTKNTNLSSSAIYTDTAPSKEIIMLSFMTAQAP
TLLLYLNFSSQNFLAILLSWNGSLQIHYQLSKEESHVFTINTENLANRRVHQVKMSRDGPELSIQMDQQL
FSYTFSLESEFQRARSLVLGKVTETLGLDPEVARANTLGFVGCLSSVQYNHITPLKAALRHASISPVTVQ
RTLTESSCVSMVDSDANAVTTVYSSTDPFGERDEREPLTNAVPSDLAVIGGIIAVVTFISFSVIGIMTHF
FYQHKRSHYASQMKEKEYPENVDSSSRNDIDLQNTTRECKQEDFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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