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Report for CCDS37699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37699.1 Public Mus musculus 17 Prkd3 23 108 98 CCDS HistoryNCBI Gene:75292Re-query CCDS DB by CCDS ID:37699.1Re-query CCDS DB by GeneID:75292See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003191.13 ENSMUSP00000003191.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003191.13Link to Ensembl Protein Viewer:ENSMUSP00000003191.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003191Re-query CCDS DB by Protein ID:ENSMUSP00000003191
Original member Current member EBI ENSMUST00000168887.7 ENSMUSP00000132004.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168887.7Link to Ensembl Protein Viewer:ENSMUSP00000132004.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168887Re-query CCDS DB by Protein ID:ENSMUSP00000132004
Original member Current member NCBI NM_029239.3 NP_083515.2 Accepted alive Link to Nucleotide Sequence:NM_029239.3Link to Protein Sequence:NP_083515.2Re-query CCDS DB by Nucleotide ID:NM_029239Re-query CCDS DB by Protein ID:NP_083515Link to BLAST:NP_083515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083515.2 889 Q8K1Y2 889 100% 0 0

Chromosomal Locations for CCDS 37699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78951857 78952030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78952677 78952762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78954474 78954741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78956522 78956620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78957142 78957303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78959032 78959138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78961111 78961183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78962527 78962576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78966175 78966451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78968040 78968117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78971360 78971483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78972403 78972586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78974735 78974812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78975375 78975567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78981774 78981931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78983526 78983657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78985215 78985353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79012624 79012911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2670 nt):
ATGTCTGCAAATAATTCCCCTCCATCAGCCCAGAAATCTGTGTTCCCTGCAACTGTTTCTGCTGTGCTTC
CAGCTCCTTCTCCGTGTTCAAGTCCCAAAACAGGACTCTCAGCTCGGCTCTCTAATGGCAGCTTCAGTGC
CCCGTCACTCACAAACTCTAGAGGCTCAGTGCACACAGTTTCATTTCTACTTCAGATTGGCCTCACACGA
GAGAGTGTTACCATCGAGGCCCAGGAACTGTCTCTCTCTGCTGTCAAAGACCTCGTGTGCTCCATTGTTT
ATCAGAAGTTTCCAGAGTGTGGATTCTTTGGCATGTATGATAAAATTCTTCTCTTTCGCCACGACATGAA
CTCAGAAAACATTTTGCAGCTGATTACCTCAGCAGATGAAATACATGAAGGGGACCTGGTAGAAGTTGTC
CTGTCAGCTTTGGCCACAGTGGAAGACTTCCAGATCCGCCCTCACGCTCTCTATGTACATTCTTACAAAG
CACCTACTTTTTGTGATTACTGTGGTGAAATGCTCTGGGGACTGGTACGTCAAGGATTAAAATGTGAAGG
CTGTGGATTAAATTATCATAAACGATGTGCCTTCAAGATTCCAAATAACTGCAGTGGAGTAAGAAAGAGA
CGTCTGTCAAATGTATCTCTGCCAGGACCTGGCCTCTCAGTTCCAAGACCCCTGCAGCCTGAGTGTGTGC
CCCTTCTCAGTGAAGAGTCACATACTCACCAAGAGCCCAGTAAGAGAATCCCGTCGTGGAGTGGTCGTCC
GATCTGGATGGAAAAGATGGTAATGTGCAGGGTCAAAGTCCCTCACACATTTGCTGTCCACTCTTATGGC
CGCCCGACCATATGCCAGTACTGCAAGCGCCTGCTGAAAGGCCTCTTCCGCCAAGGGATGCAGTGTAAAG
ATTGCAAATTCAACTGCCATAAACGCTGTGCATCCAAAGTACCAAGAGACTGCCTTGGCGAAGTTACTTT
CAATGGAGAGCCGTGCAGCGTGGGGACTGATGCAGACATGCCCATGGATATTGACAGTAGTGATGTGAAC
AGTGATGGCAGTAGGGGCTTGGATGACTCAGAGGAGCCGTCCCCGCCCGAAGACAAGATGTTCTTCCTCG
ACCCGACTGATCTCGACGTGGAGCGAGATGAGGAGACTGTTAAGACAATCAGTCCATCCACCAGCAATAA
TATCCCGCTGATGAGGGTGGTGCAGTCCATCAAGCACACAAAGAGGAGGAGCAGCACAGTTGTGAAGGAA
GGGTGGATGGTCCACTACACCAGCAGGGACAACCTGAGAAAGAGACATTATTGGAGACTTGACAGTAAAT
GTCTAACATTGTTTCAAAATGAATCTGGATCAAAGTATTATAAGGAAATTCCACTTTCAGAAATTCTCCG
TGTATCTTCACCGCAAGATTTCACCAGCATTTCACAAGGCAGTAACCCACACTGTTTTGAAATCATCACC
GATACCGTGGTATACTTTGTTGGTGAGAACAATGGGAGCAGCTCTCATAATCCTGTTCTCGCTGCCACTG
GAGTGGGACTAGATGTGGCGCAGAGCTGGGAAAAAGCAATTCGCCAGGCCCTCATGCCTGTCACTCCTCA
AGCAAGTGTTTGCACTTCTCCGGGGCAAGGGAAGGACCACAATCTGGCTACCAGTATCTCCGTGTCTAAC
TGTCAGGTTCAGGAGAATGTCGACATCAGCAGCGTTTACCAGATCTTTGCGGACGAGGTGCTTGGTTCTG
GCCAGTTTGGCATTGTTTATGGAGGAAAACACAGAAAGACGGGAAGGGATGTGGCTATTAAAGTGATTGA
TAAAATGAGGTTCCCCACAAAGCAAGAGAGTCAGCTCCGGAACGAAGTGGCCATTTTACAGAATCTGCAC
CATCCTGGGATTGTAAACCTGGAGTGTATGTTTGAAACCCCAGAACGAGTCTTCGTGGTGATGGAAAAGC
TCCATGGAGATATGTTGGAAATGATTCTGTCCAGTGAAAAGAGTCGACTTCCAGAACGGATTACCAAATT
CATGGTCACACAGATACTTGTTGCCTTGAGGAATTTACATTTCAAGAATATTGTGCACTGTGATTTAAAG
CCCGAAAATGTGCTGCTTGCATCCGCAGAGCCATTTCCTCAGGTGAAGCTGTGTGACTTTGGGTTTGCCC
GCATCATTGGTGAGAAGTCGTTCCGGAGGTCAGTGGTAGGAACTCCAGCCTACTTAGCCCCTGAGGTTCT
CAGGAGCAAAGGCTACAACCGTTCTCTAGACATGTGGTCGGTGGGCGTCATCGTTTATGTGAGCCTCAGT
GGCACATTCCCATTCAATGAAGATGAAGATATAAATGACCAAATCCAAAACGCTGCGTTTATGTACCCAC
CAAATCCATGGCGAGAAATTTCCAGTGAAGCAATTGACTTGATAAACAACTTGCTTCAAGTGAAGATGAG
AAAACGATACAGTGTTGACAAATCTCTCAGTCATCCTTGGCTACAGGATTATCAGACTTGGCTTGACCTC
AGAGAATTTGAAACTCGCATTGGAGAACGTTACATTACACACGAAAGTGATGATGCTCGCTGGGAAATAC
ACGCATACACGCACAATCTGGAATACCCAAAGCATTTCATTATGGCCCCCAACCCAGACGACATGGAGGA
GGATCCTTAG

Translation (889 aa):
MSANNSPPSAQKSVFPATVSAVLPAPSPCSSPKTGLSARLSNGSFSAPSLTNSRGSVHTVSFLLQIGLTR
ESVTIEAQELSLSAVKDLVCSIVYQKFPECGFFGMYDKILLFRHDMNSENILQLITSADEIHEGDLVEVV
LSALATVEDFQIRPHALYVHSYKAPTFCDYCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRKR
RLSNVSLPGPGLSVPRPLQPECVPLLSEESHTHQEPSKRIPSWSGRPIWMEKMVMCRVKVPHTFAVHSYG
RPTICQYCKRLLKGLFRQGMQCKDCKFNCHKRCASKVPRDCLGEVTFNGEPCSVGTDADMPMDIDSSDVN
SDGSRGLDDSEEPSPPEDKMFFLDPTDLDVERDEETVKTISPSTSNNIPLMRVVQSIKHTKRRSSTVVKE
GWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRVSSPQDFTSISQGSNPHCFEIIT
DTVVYFVGENNGSSSHNPVLAATGVGLDVAQSWEKAIRQALMPVTPQASVCTSPGQGKDHNLATSISVSN
CQVQENVDISSVYQIFADEVLGSGQFGIVYGGKHRKTGRDVAIKVIDKMRFPTKQESQLRNEVAILQNLH
HPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKSRLPERITKFMVTQILVALRNLHFKNIVHCDLK
PENVLLASAEPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRSKGYNRSLDMWSVGVIVYVSLS
GTFPFNEDEDINDQIQNAAFMYPPNPWREISSEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQTWLDL
REFETRIGERYITHESDDARWEIHAYTHNLEYPKHFIMAPNPDDMEEDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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