NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37777.1 Public Mus musculus 18 Pcdha9 23 108 98 CCDS HistoryNCBI Gene:192161Re-query CCDS DB by CCDS ID:37777.1Re-query CCDS DB by GeneID:192161See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115659.5 ENSMUSP00000111323.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115659.5Link to Ensembl Protein Viewer:ENSMUSP00000111323.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115659Re-query CCDS DB by Protein ID:ENSMUSP00000111323
Original member Current member NCBI NM_138661.1 NP_619602.1 Accepted alive Link to Nucleotide Sequence:NM_138661.1Link to Protein Sequence:NP_619602.1Re-query CCDS DB by Nucleotide ID:NM_138661Re-query CCDS DB by Protein ID:NP_619602Link to BLAST:NP_619602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619602.1 979 Q91Y11 979 100% 0 0

Chromosomal Locations for CCDS 37777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36997880 37000360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2940 nt):
ATGAGATTAGGAAATCGACCAGAAGATATTAGAACTTGTGTGCATCTCAGATGGCACATTCATGGACTTT
TAAGACAAGAGAATGCTTCAGTGGTGATCTCCAAATGTCTGAGGCATGGAGCTTGGCGCCTGCTACTTTG
GCTTCTGCTCCTTGCAACATGGGATGTAGGGAGCGGCCAGCTTCACTACTCTGTCCCAGAGGAGGCCAAA
CACGGCACCTTCGTGGGCCGCATCGCGCAGGACTTGGGGCTGGAGCTGGCTGAACTGGTGCCCCGCCTGT
TCAGGGTGGTGTCCAAGGACCGCGGGGACCTTCTGGAGGTAAATCTTCAGAATGGCATTTTGTTTGTGAA
TTCTCGGATCGACCGGGAGGAGCTGTGCGGGCAGAACGCGGAGTGTAGCATCCACCTGGAGGTGATCGTG
GACAGGCCGCTGCAGGTTTTCCACGTGGAGGTGGAGGTGAGGGACATTAATGACAACCCTCCGATATTCT
CCGTAGCGGAACAAAAGATCTTGGTAGCTGAATCTAGACTGCTTGATTCTCGATTTCCACTAGAAGGCGC
CTCTGATGCAGATGTTGGAGAGAACTCTATGCTTACTTACAAACTCAGTTCAAATGAGTTTTTTATCCTT
GATATTGTAAACAAAAGAGGCAAAGGCAAATTTCCAGTGCTTGTTCTTCGAAAACTGATAGATCGAGAAG
AAAATCCTCAGCTAAAGTTGCTACTGACAGCAACCGATGGAGGCAAACCTGAATTTACGGGATCGGTTTC
TCTGTTGATCCAGGTGTTGGATGTTAATGACAATGCTCCTGTGTTTGACAGATCTGTTTACGAAGTTAAG
ATGTATGAGAATCAAGAGAATAAAACCTTAGTAATATGGCTGAATGCTACTGACTCAGATGAAGGAATAA
ACAAAGAAGTGGAGTATTCATTTAGCTCTTTAGCCTCATCGATTATAAGACAGAAATTTCTAATAAACGA
AAAGACTGGAGAGATAAAAATAAACGGCGCTATTGACTTTGAGGAGAGTAACAATTATGAAATTCACGTG
GATGCTACAGATAAAGGATACCCACCTATGGTTGCTCACTGCACCGTACTCGTGGAAATCTTGGATGAAA
ATGATAACGCACCGGAGATAGTCCTTACTTCTTTGTCTTTGCCGGTGAAAGAAGATGCTCCTTTGGGCTC
TGTAATCGCCCTGATCAGCGTGTCAGACAAAGACTCTGGTGTCAATGGACAGGTGACCTGCTCCTTGACT
AACCATGTCCCCTTCAAGTTGGTGTCCACCTTCAAGAATTACTATTCCCTCGTGCTGGACAGCGCCCTGG
ACCGAGAGACCACAGCTGACTATAAGGTGGTGGTGACAGCCCGCGACGGGGGCTCGCCCTCTCTGTGGGC
CACGGCCAGCGTGTCCGTGGAGGTGGCTGACGTGAACGACAATGCTCCTGCATTCGCACATCCCGAATAC
ACGGTGTTCGTGAAGGAGAACAACCCGCCTGGAGTGCACATCTTCACAGTATTGGCGGTGGATGCTGACG
CACAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTA
TGTGTCTGTGCACGCGGAGAGCGGCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTG
CTGCAGTTCCAGGTGAGCGCGCGGGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGT
TTGTGCAGGATGAGAATGACAATCCGCCCACGCTGCTCGGACATCAGTCAGGTGGACCTGCTGGCGAATT
TAGCCAGCTTGTTTCGCGGTCAGTGGGTGCGGGACACGTGGTGTCAAAGGTGCGCGCGGTGGATGCGGAC
TCCGGTTACAACGCGTGGCTGTCTTATGAGCTCCACCCAACTGTGGGCGCTCGCAGCCCTTTCCGTGTCG
GTCTCTACACGGGTGAGATCAGCATGACCCGAGCCCTGGATGAATCTGATTTACCGCGCCAGCGCCTATT
GGTGTTGGTGAAGGACCACGGCGAACCTATGTTGATCGCCACTGCCACCGTTTTGGTGTCCCTGGTGGAG
AACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGGTTGCCCAACTCCTCCCGCAGGGAGGCGTCGCTGATGG
ATGTCAATGTATACCTGATCATTGCCATTTGCGCAGTGTCCAGCCTGTTGGTGCTCACGCTGCTGCTATA
CACAGCCCTGCGCTGCTCAGCTGTGCCCATGCAGGCTGGGTGCGGGCTTGGGAAGCCCACTCTGGTGTGC
TCAAGCGCTGTGGGGACCTGGTCATACTCACAGCAGAGACAGCAGCGAGTATGCTCAGGAGAGGGTCCGC
CCAAAACCGACCTCATGGCTTTTAGCCCCAGTCTTACACCTTGCCCAGTGGCCGAAGTGGGAATGGAAAG
TCATTCTGTTGGAGGAGACGTGCCCGGAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCG
CTAAGAGCAGGCATGCACAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGC
CTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGT
GGGCGCCGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCC
GGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTA
ACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAA
GAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA

Translation (979 aa):
MRLGNRPEDIRTCVHLRWHIHGLLRQENASVVISKCLRHGAWRLLLWLLLLATWDVGSGQLHYSVPEEAK
HGTFVGRIAQDLGLELAELVPRLFRVVSKDRGDLLEVNLQNGILFVNSRIDREELCGQNAECSIHLEVIV
DRPLQVFHVEVEVRDINDNPPIFSVAEQKILVAESRLLDSRFPLEGASDADVGENSMLTYKLSSNEFFIL
DIVNKRGKGKFPVLVLRKLIDREENPQLKLLLTATDGGKPEFTGSVSLLIQVLDVNDNAPVFDRSVYEVK
MYENQENKTLVIWLNATDSDEGINKEVEYSFSSLASSIIRQKFLINEKTGEIKINGAIDFEESNNYEIHV
DATDKGYPPMVAHCTVLVEILDENDNAPEIVLTSLSLPVKEDAPLGSVIALISVSDKDSGVNGQVTCSLT
NHVPFKLVSTFKNYYSLVLDSALDRETTADYKVVVTARDGGSPSLWATASVSVEVADVNDNAPAFAHPEY
TVFVKENNPPGVHIFTVLAVDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELEL
LQFQVSARDAGVPALGSNVTLQVFVQDENDNPPTLLGHQSGGPAGEFSQLVSRSVGAGHVVSKVRAVDAD
SGYNAWLSYELHPTVGARSPFRVGLYTGEISMTRALDESDLPRQRLLVLVKDHGEPMLIATATVLVSLVE
NGQVPKASSQGLPNSSRREASLMDVNVYLIIAICAVSSLLVLTLLLYTALRCSAVPMQAGCGLGKPTLVC
SSAVGTWSYSQQRQQRVCSGEGPPKTDLMAFSPSLTPCPVAEVGMESHSVGGDVPGKPRQPNPDWRYSAS
LRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGP
GELPDKFIIPGSPAIISIRQEPANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH