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Report for CCDS37823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37823.1 Public Mus musculus 18 Csnk1g3 23 108 98 CCDS HistoryNCBI Gene:70425Re-query CCDS DB by CCDS ID:37823.1Re-query CCDS DB by GeneID:70425See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069597.7 ENSMUSP00000070259.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069597.7Link to Ensembl Protein Viewer:ENSMUSP00000070259.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069597Re-query CCDS DB by Protein ID:ENSMUSP00000070259
Original member Current member NCBI NM_152809.2 NP_690022.2 Accepted alive Link to Nucleotide Sequence:NM_152809.2Link to Protein Sequence:NP_690022.2Re-query CCDS DB by Nucleotide ID:NM_152809Re-query CCDS DB by Protein ID:NP_690022Link to BLAST:NP_690022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690022.2 424 Q8C4X2 424 100% 0 0

Chromosomal Locations for CCDS 37823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 53895777 53895954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53902853 53902893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53906600 53906669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53916975 53917123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53918799 53919033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53930069 53930154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53930278 53930362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53932191 53932339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53933450 53933545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53948048 53948154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53948645 53948668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53953245 53953299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGATAATAAAAAGAAAGACAAGGACAAATCAGATGATAGAATGGCACGGCCCAGTGGTCGGTCAGGGC
ACAGCACTCGAGGAACTGGGTCTTCTTCATCTGGAGTTTTAATGGTTGGACCTAACTTTAGAGTTGGGAA
AAAAATCGGATGTGGCAATTTTGGAGAATTACGATTAGGGAAAAATTTATACACAAATGAATATGTGGCG
ATTAAACTGGAGCCCATGAAATCCAGAGCACCACAGCTGCATTTGGAATACAGATTCTATAAGCAGTTAG
GATCTGGAGATGGTATACCTCAAGTTTACTATTTTGGCCCTTGTGGTAAATACAACGCGATGGTGCTGGA
ACTGCTGGGACCGAGTTTGGAGGATTTGTTTGACCTCTGTGATAGAACATTTTCTCTTAAAACAGTTCTC
ATGATAGCTATACAGCTGATTTCTCGTATGGAGTATGTCCACTCAAAGAACTTGATATACAGAGATGTGA
AGCCTGAGAACTTCTTAATAGGACGGCCAGGAAACAAAGCCCAGCAAGTCATTCATATCATAGATTTTGG
TTTGGCAAAGGAATATATTGATCCAGAGACAAAGAAACATATACCATACAGAGAACACAAAAGCCTTACC
GGAACCGCCAGATACATGAGCATAAACACACATCTAGGAAAAGAGCAGAGTAGAAGAGATGATTTAGAAG
CCTTAGGCCACATGTTCATGTACTTCCTGAGAGGCAGTCTTCCTTGGCAAGGCTTAAAGGCTGACACATT
AAAAGAGAGGTATCAGAAAATTGGAGACACAAAACGAGCCACACCAATAGAAGTGTTGTGTGAGAACTTC
CCAGAAGAAATGGCAACGTATCTCCGTTACGTACGAAGGCTGGATTTTTTTGAAAAGCCAGACTATGATT
ACCTAAGAAAGCTTTTTACTGACTTGTTTGATCGAAAAGGGTATATGTTTGATTATGAATATGACTGGAT
TGGTAAACAGTTGCCTACTCCAGTAGGTGCAGTTCAGCAAGACCCTGCTCTGTCATCAAACAGAGAAGCA
CACCAACACAGAGATAAGATACAGCAGTCTAAAAACCAGGTTGTAAGTTCTACAAATGGAGAGCTGAACA
CGGATGACCCCACGGCAGGACGGTCGAATGCACCCATTACAGCTCCTACAGAAGTGGAAGTGATGGACGA
GACAAACTGCCAGAAAGTATTGAATATGTGGTGCTGCTGTTTTTTCAAACGAAGGAAAAGGAAAACCATA
CAACGTCACAAATGA

Translation (424 aa):
MDNKKKDKDKSDDRMARPSGRSGHSTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVA
IKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVL
MIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLT
GTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENF
PEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALSSNREA
HQHRDKIQQSKNQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETNCQKVLNMWCCCFFKRRKRKTI
QRHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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