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Report for CCDS37832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37832.1 Public Mus musculus 18 Dctn4 23 108 98 CCDS HistoryNCBI Gene:67665Re-query CCDS DB by CCDS ID:37832.1Re-query CCDS DB by GeneID:67665See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37832.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025505.6 ENSMUSP00000025505.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025505.6Link to Ensembl Protein Viewer:ENSMUSP00000025505.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025505Re-query CCDS DB by Protein ID:ENSMUSP00000025505
Original member Current member NCBI NM_026302.4 NP_080578.1 Accepted alive Link to Nucleotide Sequence:NM_026302.4Link to Protein Sequence:NP_080578.1Re-query CCDS DB by Nucleotide ID:NM_026302Re-query CCDS DB by Protein ID:NP_080578Link to BLAST:NP_080578.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080578.1 460 Q8CBY8-2 460 100% 0 0

Chromosomal Locations for CCDS 37832.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60526231 60526365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60534593 60534663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60538264 60538442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60541572 60541615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60544039 60544146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60545748 60545821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60546221 60546333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60546767 60546876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60550186 60550259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60551888 60551942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60552845 60552952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60555107 60555204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60556228 60556441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGCGTCCCTGCTGCAGTCGGAGCGGGTTCTCTATCTCGTCCAAGGAGAAAAGAAGGTTCGGGCTCCGC
TCTCACAGCTCTACTTCTGCCGCTACTGCAGTGAGCTTCGATCGCTGGAATGTGTGTCGCACGAGGTGGA
CTCACATTATTGTCCCAGCTGCTTAGAAAACATGCCGTCAGCTGAAGCCAAATTAAAAAAGAATAGATGT
GCCAACTGCTTTGACTGTCCTGGATGCATGCACACCCTTTCTACCCGTGCAACAAGCATCTCCACACAGC
TTCCCGATGACCCAGCCAAAACCACCATGAAGAAAGCCTATTACTTGGCCTGTGGATTTTGTCGATGGAC
ATCTAGAGATGTGGGCATGGCAGACAAATCTGTCGCTAGTGGTGGTTGGCAAGAACCAGAAAACCCTCAC
ACACAACGGATGAACAAGTTGATTGAGTATTACCAGCAGCTTGCTCAGAAGGAAAAGGTCGAACGAGATC
GCAAGAAGCTGGCACGGCGAAGAAATTACATGCCTTTGGCTTTTTCGGACAAGTACAGTCTTGGGACCAG
GCTTCAGCGACCACGAGCTGGTGCATCCATCAGTACACTTGCTGGACTTTCCCTTAGAGAAGGAGAAGAT
CAGAAAGAGGTGAAGATTGAGCCGGCTCAGGCTGTCGCTGAAGTGGAGCCTCTGCCTGAAGACTATTACA
CGCGGCCAGTGAACCTAACAGAAGTGACCACCCTTCAGCAGCGCCTCTTACAGCCCGACCTACAGCCAGT
CTCTGCTTCACAGCTTTATCCTCGACACAAGCACCTTCTGATCAAACGGTCCCTGCGCTGTCGGAAATGT
GAGCACAACTTGAGCAAGCCAGAATTTAATCCAACATCTATCAAATTCAAAATCCAGTTGGTTGCTGTCA
ATTATATTCCAGAAGTGAGAATCATGTCAATCCCCAACCTTCGCTACATGAAGGAGAGCCAGGTCCTCTT
GACTCTTACAAATCCAGTGGAGAACCTCACCCATGTGACTCTGTTGGAGTGTGACGAGGGGGACCCTGAT
AATATCAACAGCACTGCTAAGGTGGTGGTGCCTCCCAAAGAGCTCATCTTAGCCGGCAAGGATGCAGCAG
CAGAATATGATGAGCTGGCAGAGCCCCAGGACTTCCAGGATGACCCTGACATCGTAGCTTTCAGAAAAGC
CAACAAAGTGGGCATCTTCATCAAAGTCACCCCACAGCGTGAGGAAGGGGAAGTGACCGTGTGCTTCAAG
ATGAAACACGATTTTAAAAACCTGGCTGCCCCCATCCGCCCAGTGGAAGAAGGTGACCAAGGCACAGAGG
TCATCTGGCTCACGCAGCACGTGGAGCTGAGCTTTGGCCCTCTTCTTCCTTAA

Translation (460 aa):
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRC
ANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPH
TQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYSLGTRLQRPRAGASISTLAGLSLREGED
QKEVKIEPAQAVAEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDLQPVSASQLYPRHKHLLIKRSLRCRKC
EHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLLECDEGDPD
NINSTAKVVVPPKELILAGKDAAAEYDELAEPQDFQDDPDIVAFRKANKVGIFIKVTPQREEGEVTVCFK
MKHDFKNLAAPIRPVEEGDQGTEVIWLTQHVELSFGPLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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