NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37840.1 Public Mus musculus 18 Sh3tc2 23 108 98 CCDS HistoryNCBI Gene:225608Re-query CCDS DB by CCDS ID:37840.1Re-query CCDS DB by GeneID:225608See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051720.5 ENSMUSP00000055094.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051720.5Link to Ensembl Protein Viewer:ENSMUSP00000055094.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000051720Re-query CCDS DB by Protein ID:ENSMUSP00000055094
Original member NCBI NM_172628.2 NP_766216.2 Updated not alive Link to Nucleotide Sequence:NM_172628.2Link to Protein Sequence:NP_766216.2Re-query CCDS DB by Nucleotide ID:NM_172628Re-query CCDS DB by Protein ID:NP_766216
Current member NCBI NM_172628.3 NP_766216.2 Accepted alive Link to Nucleotide Sequence:NM_172628.3Link to Protein Sequence:NP_766216.2Re-query CCDS DB by Nucleotide ID:NM_172628Re-query CCDS DB by Protein ID:NP_766216Link to BLAST:NP_766216.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766216.2 1289 Q80VA5-1 1289 100% 0 0

Chromosomal Locations for CCDS 37840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61953116 61953167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61960944 61961042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61967989 61968116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61970942 61971047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61973287 61973430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61974449 61974647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61975569 61975642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61977877 61978072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61987556 61987689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61989193 61989234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61989344 61991044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61991138 61991318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62007648 62007798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62008457 62008579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62011807 62011957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62013033 62013229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62014899 62015090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3870 nt):
ATGGGTGGCTGCTTCTGTATCCCTGGGGAGCGGAGTCTACCCTGGGGTCCAGGTAAAGAAGGTTCTTCCA
AGGATCCACCTGGATTGGCTGAGGACACGTCCTCACTTGAAAACAAGAGAAAATGTTTCCTGCCACAGAA
TATGACCCAAGACCTGGTGCTCTCATTCTGTGTGAAGAGTCGCTCCAGGAGGTGTGTCAACGCAGCCTTA
CAGGAAGCTGCACGGAGACGGCTCTGGGCCCTGGAGAATGAAGCCCAGGAAGTCCACGCGCTATTTAAGG
ATCTCTCTGCAAGGTTGGTGAGTGTCCAGTCCCAGAAGGACCAGTTCCTCATCACCTTCAAGACCCTGGA
GGAAATCTGGAAGTTTTCCACGTACCTGAACTTAGGCTATGTGTCCATATGTCTGGAACATCTCTTCTTT
GACCACACGTACTGGCTCAACAGCAGGCTGGTGGACGACACAGAGATCCAAGTGTCTGTGGATGACAATC
ACTTGGAAAACATATACCTGGGCCTCCTGCTGCAGGAAGGTCACTTCTTCTGCAGAGCCGTGTGCTCCGT
GGCTCAGCCAGCTGACAAGGAAGGAGAATATTTGACACTGTGCAAGAATGAGCTGATCTCCGTGCTCTCT
GGAGGCGAGTCGGAGTGCGAAGCCATGTCCTTAGTGACGGGCCAGAGGGGCCTGGTGCCCATGTCAGCCC
TGGAGCCCCTGCCTGTCCCTTTCCACCAATGGTTCCTAAAGAATCACCCAGGAATCTGTGGCCTTCCCAG
GAAGAGAGACTGGACAGGCTCCGGCCAGATCGGCAGAGGACGGTGCAAGGCTCTGATGGATTATGAGCAG
GAGGAAAGAGACGAACTGTGTTTCCTCCAGGGTGAAAGCATTGACGTCATCGGCTTTGTCATACCTGGGC
TGCAGTGGTTCATTGGGAAGTCAGTGAGTTCAGGAGAAGTGGGCTTTGTCCCCACCAGGAGCATCGATCT
TGATTCTTGCTCCCCGATGAGCAAGAACTCTGCCTTTTTCAGTGATGAGGAAAGGAGTTCTCTCTGGTCC
CCAGGAAGTGAGAGGAAGGCCGAGTGTTCCGGCTTCCTATGTTCGCTCGCTCATACTGACATCACTTCTA
TTTACCGGCTGAGTGAGTTTGAAGCCATCCAGAATCTCCAGAATGATCTGAGTGCATCGCAGCCCGAGGG
CTTCAGGGAGGCCAGGTCTGGTGGGACCTGGATGGAGCGGCAGACCATAGGCTCTAGGCGTTCCAGCGGT
TCTGGAGACTCCAGCCCCGAGGAGGATGAGCTCATCTCAGCCTCCTCGGACAGCTATCACCTTCCGGAGC
CCGAGGACCTCGATGACCCGGAACTGTTCATGGACCTGAGCACCAGCCTGGAGGAGGATGATGTGGAGCA
CTTTGCCCCCATCTTGGCTTTTCTAGATCACGAAGGCTACACCGACCACTTTAAGAGCCTCTATGATTTC
TCCTTCTCTTTTCTGACTTCCTCCTTCTACAGCTTCTCTGAGGAGGATGAGCTAGTGGCCTACCTAGAGA
CTTCAAGGAAGTGGGCCAAGATGAGCCACATGACATGGGCCCATGCCCGGCTCTGCTTCCTCCTGGGCCG
ACTAAGCATCAGGAAGACCAAACTTTCTCAGGCCAGGGTCTACTTTGAGGAGGCCATTCGAGTCCTTGAT
GGGGCGTTTGAGGACCTCTCCCTGGTGGCTGCTCTGTACATCAACTTGGCAGCTATCTACCTGAGGCAGA
GGCTAAGACATAAAGGGCCCACCTTGCTTGAAAAGGCGGGCGCTCTGCTGGCCTGCCTGCCAGACCATGA
GTTCAGTACGAAGAATGAGCTAGATGTAGTGACTTACGTGCTGCGCCAAGGGATCGTGGTGGGGAGTGGC
CTTCTGGAGGCCAGGTCCTGCTTCCTGGCCATCCGGTTGCTCCTGAGCCTTGGCCGGCACGAGGAAGTTG
TGCCATTCGCAGAACGTCTGCAGCTCCTTTCTGGACACCCTCCCGCTTCGGAGGCTACAGCCACCATGTT
GAGTTCTCTGTATGACAAGAAGTATCTTCCGCATCTCGCAGTGGCCTCTGTTCAAAAACGTGGTCCCCAG
AGTGCCCGGGGGATGTCTCTTTCCATTTGGCAGGCCTACTTGGTTCTCCAGAATGCCACTAAGATCCTGG
GTGTTCCTTCTTCAAACTGGTGTGAGGTTTCCGCCCTGGCCTGCCCAACCCTCAGGCAGGCCCTGGCTGC
CTGTGAGGAACTGAGTGACCAGGACATCCAGAGGACCTTGTGTCTCATCCTGTCTAAGATGTACCTCCAG
CACCAATCTCCTGATGGTTCTGTCCACTACCTGAGCCAGGCCCATGTGTTAGGGAAACTACTGGGTGAAG
AGGAAGCCTTCGAATCTTCTCTCTGTCTGGCATGGGCATACCTCTTAGGCAGGCAGACAGAGAAGGCCTT
GGAGATTCTTGAGCCGCTACTATGCTCCTTGAGAGAGACAGAGTGCGTGACCCAGAGGGGAGTGGTCCAC
AACCTCCTGGGACTTGCGTTTGAAGATGAAGGCCGGACTAGCAGGGCGGCCAAGAGCTACCTCCGAGCTC
TGATCAGAGCTCGGGAGATGGGGAACATACGTAACCAGGCTGTGTCTATGGCCAATCTTGGTCACTTGAC
CCTCAAGTCATGTATGCAGCAGTCAGCCAGGGGTTATCTCCTGCAGGCTGTCCGGCTGTATTCCGAACTC
CAAGCCAGCAAGGAGACAGACATGGAGTTGGTACAGGTGTTACTCTGGTTGGGCCAAGCTTCGGTGTCTG
GACACCAGCTGGTCCACAGCCGCCTTTGTTATGAAATGGCATTGCTGTTTGGCTTAAGGCACCAACACCT
AAGCAGTCAACTTCAGGTCACCAAATCCCTCTGCCATTTCTACAGCTCGGTGTCCCCGAACCCCGATGCG
TGCATTACCTATCATGAACACTGGCTGGCCCTGGCTCAGCAACTCAGGGATCGGGAGATGGAGGGACAGT
TACTGGAGTCCCTTGGGCAGCTTTATAGGAACCTAAACACATCCAGGTCCCTCCGAAGGTCCCTCGCCTG
CATCAAGGAGAGCCTGCGTATATTCGTCGACCTAGGGGAGAGAGACAAGGCTGCTGAGGCCTGGCTGGGG
GCCGGACGCCTGCACTACCTCATGCAGGAAGATGAGCTGGTAGAACTGTATTTGCAGGAGGCCATCCAGA
CAGCCTTGAGGTCAGAAGAGCCCTCCCTTGCTCTCAAGCTTTACGAAGAAGCAGGTGACGTGTTCTTCAA
CGGCACCCGCCATAGGCATCGTGCTGTGGAGTACTACCGGGCTGGCGCTGTTCCTTTAGCGAGGAGAATG
AAGGCGCTGAGAACCGAGCTGCGGATCTTCAACAAGCTGACAGAGCTGCAGATAAGCCTCGAGGGCTATG
AGAAAGCTTTGGAGTTTGCCACCCTGGCTGCCAGGCTGAGTGTCCTCACGGGAGATCAGAAACAGGAGCT
GGTGGCTTTTCACCGCCTGGCGACTGTGTACTTCTCTCTGAACATGTATGAGATGGCTGAAGACTGCTAC
CTGAAGACTCTGTCCCTGTGCCCACCATGGCTGCAGAGTCCCAAGGAGGCGCTGTACTATGCCAAGGTCT
ATTGTCGCCTTGGCCGACTCACTTTCTACCAACTGAAGGATGCCCATGATGCTACTGAATATTTTCTGCT
GGCGCTAGCAGCTGCGGTCCTGATGGGTGACGAGGAGCTGCAGAACACCATTAAGAACAGGCTAGACAGC
ATCTGCCAGAGTCCCCTGTGGCACAGCAATCCCTTCGGGTGCTCTTCAGAGAGGGCACGGTGGCTCAGTG
GTGGGAGCCTGGCCCTCTGA

Translation (1289 aa):
MGGCFCIPGERSLPWGPGKEGSSKDPPGLAEDTSSLENKRKCFLPQNMTQDLVLSFCVKSRSRRCVNAAL
QEAARRRLWALENEAQEVHALFKDLSARLVSVQSQKDQFLITFKTLEEIWKFSTYLNLGYVSICLEHLFF
DHTYWLNSRLVDDTEIQVSVDDNHLENIYLGLLLQEGHFFCRAVCSVAQPADKEGEYLTLCKNELISVLS
GGESECEAMSLVTGQRGLVPMSALEPLPVPFHQWFLKNHPGICGLPRKRDWTGSGQIGRGRCKALMDYEQ
EERDELCFLQGESIDVIGFVIPGLQWFIGKSVSSGEVGFVPTRSIDLDSCSPMSKNSAFFSDEERSSLWS
PGSERKAECSGFLCSLAHTDITSIYRLSEFEAIQNLQNDLSASQPEGFREARSGGTWMERQTIGSRRSSG
SGDSSPEEDELISASSDSYHLPEPEDLDDPELFMDLSTSLEEDDVEHFAPILAFLDHEGYTDHFKSLYDF
SFSFLTSSFYSFSEEDELVAYLETSRKWAKMSHMTWAHARLCFLLGRLSIRKTKLSQARVYFEEAIRVLD
GAFEDLSLVAALYINLAAIYLRQRLRHKGPTLLEKAGALLACLPDHEFSTKNELDVVTYVLRQGIVVGSG
LLEARSCFLAIRLLLSLGRHEEVVPFAERLQLLSGHPPASEATATMLSSLYDKKYLPHLAVASVQKRGPQ
SARGMSLSIWQAYLVLQNATKILGVPSSNWCEVSALACPTLRQALAACEELSDQDIQRTLCLILSKMYLQ
HQSPDGSVHYLSQAHVLGKLLGEEEAFESSLCLAWAYLLGRQTEKALEILEPLLCSLRETECVTQRGVVH
NLLGLAFEDEGRTSRAAKSYLRALIRAREMGNIRNQAVSMANLGHLTLKSCMQQSARGYLLQAVRLYSEL
QASKETDMELVQVLLWLGQASVSGHQLVHSRLCYEMALLFGLRHQHLSSQLQVTKSLCHFYSSVSPNPDA
CITYHEHWLALAQQLRDREMEGQLLESLGQLYRNLNTSRSLRRSLACIKESLRIFVDLGERDKAAEAWLG
AGRLHYLMQEDELVELYLQEAIQTALRSEEPSLALKLYEEAGDVFFNGTRHRHRAVEYYRAGAVPLARRM
KALRTELRIFNKLTELQISLEGYEKALEFATLAARLSVLTGDQKQELVAFHRLATVYFSLNMYEMAEDCY
LKTLSLCPPWLQSPKEALYYAKVYCRLGRLTFYQLKDAHDATEYFLLALAAAVLMGDEELQNTIKNRLDS
ICQSPLWHSNPFGCSSERARWLSGGSLAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH