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Report for CCDS37906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37906.1 Public Mus musculus 19 Rtn3 23 108 98 CCDS HistoryNCBI Gene:20168Re-query CCDS DB by CCDS ID:37906.1Re-query CCDS DB by GeneID:20168See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065304.12 ENSMUSP00000065810.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065304.12Link to Ensembl Protein Viewer:ENSMUSP00000065810.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065304Re-query CCDS DB by Protein ID:ENSMUSP00000065810
Original member Current member NCBI NM_001003934.2 NP_001003934.1 Accepted alive Link to Nucleotide Sequence:NM_001003934.2Link to Protein Sequence:NP_001003934.1Re-query CCDS DB by Nucleotide ID:NM_001003934Re-query CCDS DB by Protein ID:NP_001003934Link to BLAST:NP_001003934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003934.1 964 Q9ES97-1 964 100% 0 0

Chromosomal Locations for CCDS 37906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7427830 7427875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7429751 7429809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7430986 7431032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7431966 7432035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7432452 7432590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7434931 7435138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7456300 7458423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7467811 7467867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7482939 7483083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2895 nt):
ATGGCGGAGTCGTCAGCGGCCACTCAGTCCCCGTCAGTCTCCTCGTCGTCCTCCGGGGCCGAGCCGTCAG
CTCTCGGCGGCGGCGGCGGGAGCCCTGGAGCCTGCCCCGCCCTGGGGGCGAAGAGCTGCGGCTCCTCGTG
TGCGGATTCCTTTGTTTCTTCCTCTTCCTCTCAGCCTGTATCTATATTTTCGACCTCACAAGCGGGATTG
AGCTCTCTTTGCTCTGATGAGCCACCTTCAAAAAGTATGACTTCCTCCTTTCTTTCATCTTCTGAAATAC
ATAACCCTGACCCTACAACACCGCTTGGAGAAAAGAGTGAAACATTAGGTAGCCAGTTTGTTCTAGCTAA
AGGAAAAGACCCCTTGGTTCTTCTAGATAAGAAAAAACTGGACTCACCTCAGGGGACCAACAAGGACAGA
GTAGACGCTCCGGTTTCTCTTGCAACTGGCATTCCTTGCAGCCACCCTTCTATTCCAGACAGTTTCCCAG
AGCAACCTGCTTTTCTGTCAAAAGAAATTGGTCCAGCAGAAGAGTGGGTAGTTAAAGACCAAGAACCCAA
GAACCCAAACAAGGTTCCAGATGGGGAGGACAGAAGTGCACTGGATTTTGGGCAGTCTAAGGCAGAACAC
ATTTGTACATATTCCTTGTCCCCATCTGAACTTCCAGTAGCCAGTGTAGAAAAAGATTCTCCTGAGTCAC
CGTTTGAAGTAATTATTGACAAAGCAACATTTGACAGAGAATTTAAAGATTTGTATAAGGAAAACCCAAA
TGATTTGGGTGGCTGGGCAGCTCATGGCGATAGAGAATCCCCCGCAGACTTGTTGGAAATGAATGACAAA
CTCTTTCCACTGAGAAATAAAGAGGCAGGGCGTTACCCATCCTCTGTACTGCTCGGTAGACAGTTCTCAC
ACACTACAGCAGCACTGGAAGAGGTGTCTAGATGTGTGAATGATATGCATAACTTTACTAATGAAATACT
GACTTGGGACTTAGATCCCCAAGCAAAACAACAGGCCAATAAAACATCTTGCACCACAGAAAGTACAGGA
CTAGACAGGAGTGAACTTCGCTCAGAAATTCCAGTTATAAATCTTAAAACAAACCCTCAACAGAAAATGC
CTGTATGTTCTTTTAATGGGAGCACTCCCATTACCAAATCCACAGGTGACTGGACAGAAGCATTTACAGA
AGGAAAACCTGTAAGAGACTACCTCAGTTCCACAAAAGAAGCTGGTGGCAACGGTGTGCCAGGCAGTTCT
CAGCTTCATTCTGAGCTGCCTGGCTCTATGCCTGAGAAATGGGTCTCAGGCTCTGGAGCAGCCACAGTGG
AAGTAACTTTACCTAACCTGAGGGGTGCCTGGCCTAACTCTGTGATGGGGGAAGTCACAGAGGTTGATAG
TTCTGGGGAATCTGATGACACAGTAATAGAGGACATCACAGAAAAACCTGACTCCCTTCCAAGTGCTGCT
GCAAAAACAAGTGAAAGGGAAATCAAAGAGACTCCCAGTCGTGAAACTGTGAGGAGTGAAATGTGTGAAA
ACTCTGAGCAGCCGCAGGCCCAGCCAGAAACTCCTACTCAGAAGAGTCTGGAAGGTGAGGTGGCTTCACA
AGTACCTAATACCCTGAATGAAGTCACACCTGAAAAGCTTGATATGACTAACAACCCCAAAGTTTGCTCA
GCAGCACCTCCAAGTGTTCTTAATGAGACAGGATTCTCACTAACTGTGCCAGCTTCTGCCAAGTTGGAAT
CTTTGCTTGGAAAATATGTTGAAGATACAGATGGTTCCTCCCCAGAGGACTTGATGGCTGTCCTCACAGG
AGCCGAGGAGAAGGGGATAGTGGATAAAGAGGAAGGTGATGTTTTGGAAGCAGTGTTAGAGAAGATAGCA
GACTTTAAAAACACTTTGCCTGTGGAACTCTTGCATGAAAGTGAGCTAAGTGGTTCTGAAACCAAAAATA
TTAAAAGCAAATACAGTGAAGACAGCAGAGAAACAACTGGAGGTGCCCCTACGATGTCTCCCGACTTAGA
GCAGGAGCAGCTCACCATCAGAGCCATTAAAGAATTAGGAGAAAGGCAAGCTGAGAAGGTGCAGGATGAA
GGAATATCTTCTGGAGGAAAACTCAAGCAAACCTTTGCTCCACAGTCTGGGCCACAGAGTTCATCTGACA
TCCTAGAACACACAGATGTCAAAACTGGATCTGATCTTGGAATTCCCAAAAATCCTACTATCATCAAAAA
CACTAGAATAGATTCTATTTCCAGCCTTACCAAGACTGAAATGGTTAACAAGAATGTTCTAGCAAGACTT
CTCAGTGATTTCCCAGTGCACGATCTGATTTTCTGGCGAGATGTGAAGAAGACTGGGTTTGTCTTTGGCA
CCACACTGATCATGCTGCTCTCTCTGGCAGCCTTCAGTGTTATCAGTGTGGTCTCTTACCTCATCCTGGC
TCTTCTCTCTGTCACCATCAGCTTCAGAGTCTATAAGTCTGTCATTCAAGCTGTGCAGAAGTCAGAAGAA
GGACATCCATTCAAGGCCTACTTGGATGTGGACATTACCCTGTCTTCAGAAGCTTTCCACAACTACATGA
ATGCTGCGATGGTGCATGTCAACAAGGCCCTCAAACTCATTATTCGTCTCTTTCTGGTAGAAGACTTGGT
TGACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATGTTGGTGCTGTTTTTAATGGAATTACC
CTTCTGATTCTCGCCGAGCTGCTTGTCTTCAGCGTCCCAATTGTCTATGAGAAGTATAAGACACAGATTG
ACCACTATGTTGGGATTGCCCGGGATCAGACCAAGTCAATTGTTGAAAAGATCCAAGCAAAGCTTCCTGG
AATCGCCAAAAAAAAGGCAGAATAA

Translation (964 aa):
MAESSAATQSPSVSSSSSGAEPSALGGGGGSPGACPALGAKSCGSSCADSFVSSSSSQPVSIFSTSQAGL
SSLCSDEPPSKSMTSSFLSSSEIHNPDPTTPLGEKSETLGSQFVLAKGKDPLVLLDKKKLDSPQGTNKDR
VDAPVSLATGIPCSHPSIPDSFPEQPAFLSKEIGPAEEWVVKDQEPKNPNKVPDGEDRSALDFGQSKAEH
ICTYSLSPSELPVASVEKDSPESPFEVIIDKATFDREFKDLYKENPNDLGGWAAHGDRESPADLLEMNDK
LFPLRNKEAGRYPSSVLLGRQFSHTTAALEEVSRCVNDMHNFTNEILTWDLDPQAKQQANKTSCTTESTG
LDRSELRSEIPVINLKTNPQQKMPVCSFNGSTPITKSTGDWTEAFTEGKPVRDYLSSTKEAGGNGVPGSS
QLHSELPGSMPEKWVSGSGAATVEVTLPNLRGAWPNSVMGEVTEVDSSGESDDTVIEDITEKPDSLPSAA
AKTSEREIKETPSRETVRSEMCENSEQPQAQPETPTQKSLEGEVASQVPNTLNEVTPEKLDMTNNPKVCS
AAPPSVLNETGFSLTVPASAKLESLLGKYVEDTDGSSPEDLMAVLTGAEEKGIVDKEEGDVLEAVLEKIA
DFKNTLPVELLHESELSGSETKNIKSKYSEDSRETTGGAPTMSPDLEQEQLTIRAIKELGERQAEKVQDE
GISSGGKLKQTFAPQSGPQSSSDILEHTDVKTGSDLGIPKNPTIIKNTRIDSISSLTKTEMVNKNVLARL
LSDFPVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQKSEE
GHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGIT
LLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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