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Report for CCDS37939.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37939.2 Public Mus musculus 19 Tjp2 23 108 98 CCDS HistoryNCBI Gene:21873Re-query CCDS DB by CCDS ID:37939.2Re-query CCDS DB by GeneID:21873See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 37939.1
The coding region has been updated to extend the N-terminus and this extension is supported by conservation and transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37939.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233027.1 ENSMUSP00000156605.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233027.1Link to Ensembl Protein Viewer:ENSMUSP00000156605.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233027Re-query CCDS DB by Protein ID:ENSMUSP00000156605
Original member Current member NCBI NM_001198985.2 NP_001185914.1 Accepted alive Link to Nucleotide Sequence:NM_001198985.2Link to Protein Sequence:NP_001185914.1Re-query CCDS DB by Nucleotide ID:NM_001198985Re-query CCDS DB by Protein ID:NP_001185914Link to BLAST:NP_001185914.1

Chromosomal Locations for CCDS 37939.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 24095425 24095590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24096584 24096669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24098001 24098315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24099453 24099563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24100702 24100914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24101897 24101997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24108645 24108855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24109731 24109810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24111021 24111116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24111426 24111619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24112746 24112956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24114076 24114184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24119945 24120095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24120837 24120903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24122025 24122158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24122263 24122371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24124568 24124721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24125705 24125808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24130855 24131473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24132606 24132708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24134850 24134974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24138779 24138832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24173955 24174014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3573 nt):
ATGCCGGTGCGGGGAGACCGCGGGTTCCCACCGCGGCGGGAGCTGTCGGGCTGGCAGCGCGGTCCAGGCA
TGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAGGATTCCAAAAGAGGATTTGGAATTGC
CGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTC
CCAGGTGGACCCGCTGATGGCTTGCTTCAAGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGG
AAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATCGTGGTCAA
GAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTT
GAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCC
ACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCG
GGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGT
GAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTTGTGTCCAGGGACCACAGCCGTG
GCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTA
CGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGC
CGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATG
ATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCAAAGCAAATGAAGAGTATGGGCTCCGGCTGGG
GAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGG
GACATAATTCTCAAGATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAG
AAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGC
CCTAAACGACAGCGACTCTGAAGTGGAGGATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAG
GAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAGCT
CAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGA
CATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGTTCCTCAA
CCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGGCCCTAACACCA
AAATGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATT
TGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG
GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAG
GTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACGTGTACAGAGATATCCTGGCTTGTGGCAGGGG
AGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGG
GGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCG
GGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAGAGCCGAGCAAATGGCCAGTGTCCAGAATGC
CCAGCGAGAGAACGCCGGGGACAGAGCAGACTTCTGGCGGATGCGTGGCCAGAGATCCAGCGGCGGCGTC
AAGAAGAACCTCCGCAAGAGCCGGGAAGACCTGGCGGCTGCTGTATCGGTTAGCACCAAGTTCCCTGCCT
ACGAGAAGGTTCTGCTTCGGGAAGCTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATAT
AGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAAAAACAGAACCCAAAGATGCC
GGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGGACAAGCACG
CCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTT
CTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGT
TCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGCCACAATCA
ACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGC
AGTCTGGGTCTCTGAAGGAAAGATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACC
GCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGG
GAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTC
CTCGGAGCCGGTGCAGCACGAGGAGAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGG
GCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGGCAA
GAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAAT
CCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTG
AAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATG
CTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGAT
GCAGGAGCTCCAGGAGGCCCAGAATGCGAGGATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTT
CCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAGTTCTAGACCCCCAGAGCCCCAGA
AAGCTCCTTCCAGACTTTACCAGGACACCAGAGGAAGCTACGGCAGTGACCCCGAGGAGGAGGAGTACCG
CCAGCAGTTGGCAGCACACTCGAAGCGTGGTTACTACAGCCAGCCCTCCCGGTACCGAGACACGGAGTTA
TAG

Translation (1190 aa):
MPVRGDRGFPPRRELSGWQRGPGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVL
PGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLQGSPPLSHDDRGF
EVIEEFDGRSFRSGYSERSRHSSHDMLSHSWEGNRERGRPHQRTQSRERERSRGRSLERGLDQEDYGRSR
ERSRGRSLERGLDRDFVSRDHSRGRSIDRDYDRDYERSYHEAYEPDYGGGYSPSYDRRAHPETRYERSRS
REHLRSRSPSPESRSRHEHKGQHDPDRPIGVLLTKSKANEEYGLRLGSQIFIKEMTRTGLATKDGNLHEG
DIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSKQTLINIPALNDSDSEVEDISEIESNRSFSPE
ERRQQYSDQDYHSSTEKLKERPSSREETSGRLSRMGATPTPFKSTGDITAAGVTEASREPRYQEEGPVPQ
PRTAPRVFLRPSPEDEAIYGPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEGTSAEQEGLQEGDQILK
VNTQDFRGLVREDAVLYLLEIPKGETVTILAQSRADVYRDILACGRGDSFFIRSHFECEKETPQSLAFTR
GEVFRVVDTLYDGKLGHWLAVRIGNELEKGLIPNKSRAEQMASVQNAQRENAGDRADFWRMRGQRSSGGV
KKNLRKSREDLAAAVSVSTKFPAYEKVLLREAGFKRPVVLFGPIADIAMERLATELPDLFQTAKTEPKDA
GSEKSSGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNPDSRQGVKTIRQRLSPTSNKS
SRKLFDQANKLKKTCSHLFTATINVNSANDGWFGSLKDSIQQQQNEAVWVSEGKMEGMDDDAEDRMSYLT
AMGADYLSCDSRLISDFEDTDGEGGAYTDNELEEPAEEPLVSSITRSSEPVQHEENIRKSSPEPRAQMRR
AASRDQLRDASPPPAFKPEPPKARSQNREDSFDYSKSNLPATAGSEIPGGSTKGYPPPIAAKPAFGRPIL
KPSTPVPMPESEEVGESTEEQEDAPRSVLGRVKIFEKMDHKAKLQRMQELQEAQNARIEIAQKHPDIYAV
PIKAPKPDAGLPPHMSSRPPEPQKAPSRLYQDTRGSYGSDPEEEEYRQQLAAHSKRGYYSQPSRYRDTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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