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Report for CCDS37999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37999.1 Public Mus musculus 19 Slf2 23 108 98 CCDS HistoryNCBI Gene:226151Re-query CCDS DB by CCDS ID:37999.1Re-query CCDS DB by GeneID:226151See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096053.4 ENSMUSP00000093758.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096053.4Link to Ensembl Protein Viewer:ENSMUSP00000093758.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096053Re-query CCDS DB by Protein ID:ENSMUSP00000093758
Original member NCBI NM_001081225.2 NP_001074694.1 Updated not alive Link to Nucleotide Sequence:NM_001081225.2Link to Protein Sequence:NP_001074694.1Re-query CCDS DB by Nucleotide ID:NM_001081225Re-query CCDS DB by Protein ID:NP_001074694
Current member NCBI NM_001081225.3 NP_001074694.1 Accepted alive Link to Nucleotide Sequence:NM_001081225.3Link to Protein Sequence:NP_001074694.1Re-query CCDS DB by Nucleotide ID:NM_001081225Re-query CCDS DB by Protein ID:NP_001074694Link to BLAST:NP_001074694.1

Chromosomal Locations for CCDS 37999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44931311 44931450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44934112 44934155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44934933 44935666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44938365 44938419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44941459 44942426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44943449 44943519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44947930 44948052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44948972 44949139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44952069 44952171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44959005 44959080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44960734 44960875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44966967 44967069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44967503 44967679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44969037 44969134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44971598 44971685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44973134 44973265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44973608 44973685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44975629 44975715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44979161 44979229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44980556 44980591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3492 nt):
ATGACAAGGCGCTGCATGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGCCCCGGGGTCGTCGCCCCCGC
GCTGCCATCTGAGACCCGGTAGTACCGCCCCTGCTGCAGCGGGAAAAAGAACAGAGAGTCCTGGGGACAG
GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAGACAAACATATGTTGGATTCGCCTCAA
AAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTAT
CTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAA
AGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAA
TATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGATTGCCCAAAGAGATCAAGGCACAGA
AGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGA
CAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAG
CATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGG
CTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAAT
GGAGCAGAGAATCAACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTA
GGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCT
CAACTCTGGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAGGCTCTAA
ACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCT
ATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTA
TCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGA
CGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGAC
CAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAAT
CTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAA
GCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACT
CTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCT
CCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGG
GGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGT
GTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGA
AAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGA
AGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGA
AAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATGGAATATGCTCAGAGCGGAA
CTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAGGCTAGATGAACTACAGAA
GAAGCTACAGGAAGACATAAGACAAGGCCGTGGCATTAAATCTCCTCTCAGAACTGGCGATCAGGATAGT
ACAGATGATGGTGATGGCCTCTTGGAAGAACACAGGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATG
CTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTA
TACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAATCAGGA
AAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTG
TACCTGTGTTAAAGTGGCTGTTTCGGATGATGTCGGTTCACACAGATTGTATTGTGTCGGTGCAGATTTT
AAGTACATTGATGGAAATAACCATTAGAAATGATACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCA
TCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGA
CTCTTCAGCCTGACTTTAATGAAGAAAATCTAATTTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAG
TGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAGTTC
CTAGGTCTGTGCACATCTATACATCCAGAAGGTTACCAAGATGGAGAATTAATGCTGCTGATTTTAATGC
TGTTTAAAATGAGTTTGGAAAAAGAGCTTAAACAGATTCCATTAGTAGACTTTCAGAGCCTCCTGATAAA
TCTCATGAAAAACATCAGAGATTGGAACACAAAGGTTCATGAACTCTGTCTGGGCATAAATGAACTCTCC
AGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAGGCAGCTGA
GGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAA
TAACCTTCAGATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATG
GTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGC
AGGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTC
TGGACAACGGAAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAA
GATGCAAGACTTTTCTACAGAACTAAAGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAA
TAATTCAGAACTGTCGGCCTACTCAGGGGCAGCTTCATGACTTCTGGGTGCCAGATTCTTAA

Translation (1163 aa):
MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAPAAAGKRTESPGDRKQSIIDFFKPAAKQDKHMLDSPQ
KSNIKYRGNGLSITGTEQFERKLSSPKKLKPKRMSSEESPILEAFMKGGKEHHKDRGVHESRRPCMSLSK
YLPKGAGIYAPSSYRLPKEIKAQKKKHQSPERRKSLFIHESNREKNDRDRGKNSEDSRKQATATEGDIFK
HSSRSISSRSSLSRHHPGESTLGARFQLSLASYCREREQKKLRKEQMEQRINSENSFSEASNLSLKSSGV
GKNCKPRHEHSKHTEAVPGKSNLSTLENGHLSRKRSSSDSWELSGSKQNKFSDKRKRNSVDSDLKSTKEP
IIPKARESFLEKRPDTSHQREKFIRHIALKTPGGVLRLEDIAKEPEDETDRSSADSAPSNAGHHSSRNSD
QVHSASTKETKIQKPHLPLPQEKSTIKRASNLQKNKPAGSVTSKETKLPLLSHVPSAVSSRVPLNAKNCT
LPVPKKDKERSSSKERSGHSTESSKHKEHRAKTIKAVSNESSGKNSGGSLHSEYAPPTASPPAALEVVPS
VPSPAAPSDKESSGNSNAGSNALKRKFRGDFDSDEESLGYTLESDEEEETLKSLEEIMALNFSRTPTTSG
KPPAVSKGLRSQSSDYMEYAQSGTYTNTLERLVKEMEDTQRLDELQKKLQEDIRQGRGIKSPLRTGDQDS
TDDGDGLLEEHREFLKKFSVTVDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGESAVEKLILKSG
KTDQIFLTTQGFLTTAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTFSDSPVWPWIP
SLSDIAAVFFNMGVGFGSLFPLETLQPDFNEENLISETQKTLGGKESEDSPYSPVFSALPETNILNVVKF
LGLCTSIHPEGYQDGELMLLILMLFKMSLEKELKQIPLVDFQSLLINLMKNIRDWNTKVHELCLGINELS
SHPHNLLWLVQLVPNWTSRGRQLRQCLSLVMMSKLLDEKHEDIPNANNLQISVLHRYLVQMKPSDLLKKM
VLKKRAEQPNETIDDSLHLELEKQAYYLTYILLHLVGEVSCSHSLSSGQRKHFVLLCGALEKHVKCDIRE
DARLFYRTKVKDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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