NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
381.1 Public Homo sapiens 1 C1orf94 24 110 108 CCDS HistoryNCBI Gene:84970Re-query CCDS DB by CCDS ID:381.1Re-query CCDS DB by GeneID:84970See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 381.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373374.7 ENSP00000362472.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373374.7Link to Ensembl Protein Viewer:ENSP00000362472.3Re-query CCDS DB by Nucleotide ID:ENST00000373374Re-query CCDS DB by Protein ID:ENSP00000362472
Original member Current member NCBI NM_032884.5 NP_116273.2 Accepted alive Link to Nucleotide Sequence:NM_032884.5Link to Protein Sequence:NP_116273.2Re-query CCDS DB by Nucleotide ID:NM_032884Re-query CCDS DB by Protein ID:NP_116273Link to BLAST:NP_116273.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116273.2 408 Q6P1W5-2 408 100% 0 0

Chromosomal Locations for CCDS 381.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34197475 34197913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34200772 34201032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34202084 34202259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34208157 34208234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34212210 34212406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34218686 34218761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGCCCGTTATCAGCAGCAGGCAGGACTGTGATTCTGCCACTTCTACTGTCACAGACATTCTGTGTGCCG
CCGAGGTCAAGAGCAGCAAGGGGACAGAGGACAGGGGCCGCATCCTAGGTGACTCCAACTTGCAAGTCAG
CAAGCTTCTGTCCCAGTTCCCACTGAAGTCCACTGAGACATCCAAGGTCCCTGACAACAAGAATGTGCTG
GACAAGACAAGGGTCACCAAGGACTTCCTACAGGACAACCTGTTCAGTGGCCCTGGACCCAAGGAGCCCA
CAGGGCTGAGCCCATTTCTGCTGCTGCCTCCCCGACCTCCTCCTGCACGTCCTGACAAGCTCCCTGAGCT
CCCTGCTCAGAAGAGGCAGCTCCCAGTGTTTGCCAAGATCTGTTCCAAGCCCAAGGCTGACCCTGCTGTG
GAGAGGCACCACTTGATGGAATGGAGCCCTGGCACCAAGGAGCCAAAAAAGGGTCAAGGGAGCCTCTTTC
TCAGCCAGTGGCCCCAGAGCCAGAAGGACGCCTGTGGTGAGGAGGGTTGCTGTGACGCAGTGGGCACCGC
ATCACTGACCCTGCCGCCCAAGAAACCTACATGTCCAGCCGAGAAGAACTTGCTCTATGAGTTCCTTGGG
GCCACCAAGAACCCAAGCGGGCAGCCGAGACTTCGAAACAAAGTGGAAGTGGATGGGCCGGAGCTGAAAT
TTAACGCACCTGTGACGGTTGCTGACAAGAACAACCCGAAGTACACAGGGAATGTTTTCACTCCACACTT
TCCTACAGCCATGACCTCAGCAACCCTGAACCAGCCACTCTGGCTCAACCTGAACTATCCACCTCCACCA
GTGTTCACGAATCACTCTACCTTCTTGCAGTATCAGGGCCTGTACCCACAGCAGGCAGCGAGGATGCCCT
ATCAGCAGGCTTTGCACCCGCAGCTGGGATGTTACTCCCAACAGGTGATGCCATACAACCCACAGCAGAT
GGGACAGCAGATCTTCCGCTCTTCCTACACCCCTCTGCTGAGCTACATCCCTTTTGTCCAGCCCAATTAT
CCCTACCCTCAGAGGACACCTCCAAAGATGTCTGCCAACCCCCGAGACCCTCCCCTAATGGCAGGAGATG
GACCGCAGTACCTCTTTCCCCAAGGATATGGGTTCGGCTCGACATCCGGAGGGCCCTTGATGCACAGCCC
CTATTTTTCTTCCAGTGGGAATGGCATAAACTTTTAG

Translation (408 aa):
MPVISSRQDCDSATSTVTDILCAAEVKSSKGTEDRGRILGDSNLQVSKLLSQFPLKSTETSKVPDNKNVL
DKTRVTKDFLQDNLFSGPGPKEPTGLSPFLLLPPRPPPARPDKLPELPAQKRQLPVFAKICSKPKADPAV
ERHHLMEWSPGTKEPKKGQGSLFLSQWPQSQKDACGEEGCCDAVGTASLTLPPKKPTCPAEKNLLYEFLG
ATKNPSGQPRLRNKVEVDGPELKFNAPVTVADKNNPKYTGNVFTPHFPTAMTSATLNQPLWLNLNYPPPP
VFTNHSTFLQYQGLYPQQAARMPYQQALHPQLGCYSQQVMPYNPQQMGQQIFRSSYTPLLSYIPFVQPNY
PYPQRTPPKMSANPRDPPLMAGDGPQYLFPQGYGFGSTSGGPLMHSPYFSSSGNGINF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH