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Report for CCDS38235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38235.1 Public Mus musculus 2 Fbln7 23 108 98 CCDS HistoryNCBI Gene:70370Re-query CCDS DB by CCDS ID:38235.1Re-query CCDS DB by GeneID:70370See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028864.2 ENSMUSP00000028864.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028864.2Link to Ensembl Protein Viewer:ENSMUSP00000028864.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028864Re-query CCDS DB by Protein ID:ENSMUSP00000028864
Original member Current member EBI ENSMUST00000110324.7 ENSMUSP00000105953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110324.7Link to Ensembl Protein Viewer:ENSMUSP00000105953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110324Re-query CCDS DB by Protein ID:ENSMUSP00000105953
Original member Current member NCBI NM_024237.4 NP_077199.2 Accepted alive Link to Nucleotide Sequence:NM_024237.4Link to Protein Sequence:NP_077199.2Re-query CCDS DB by Nucleotide ID:NM_024237Re-query CCDS DB by Protein ID:NP_077199Link to BLAST:NP_077199.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077199.2 440 Q501P1 440 100% 0 0

Chromosomal Locations for CCDS 38235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 128864073 128864147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128877360 128877519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128880256 128880426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128889701 128889826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128892443 128892583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128893767 128893904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128894766 128894904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128895217 128895589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGGACCGGGCTCACAGCGCGCGCTTTTCCTCCTCTTGCTGCTCCTCGCCAGCCCCGGAGCGCGGGCTT
TCCAGAGCTGTCTCAACAAACAGCAGCTCCTCACCACCATCCGCCAGCTGCAGCAGCTGCTGAAAGGCCA
GGAGACCCGCTTCACCGAAGGCATCCGAAACATGAAGAGCCGGCTGGCTGCACTGCAAAACACGGTTAAC
AAAATGACCCCGGATGCACCACCAGTTTCCTGCCCAGCTCTGGAGGCCCCTCCGGATGGCAAGAAGTTTG
GAAGCAAGTACTTAGTGGACCATGAAGTCTATTTTACCTGCAACCCTGGGTTCCAGCTGGTTGGGCCCAG
CAGCGTGGTGTGTCTTGCTAATGGTAGCTGGACAGGAGAGCAGCCCCGCTGCAGAGATATCAGTGAATGC
TCCAGCCAGCCTTGTCACAATGGAGGGACGTGTGTGGAAGGCATCAACCACTACAGATGCATCTGTCCTC
CAGGAAAAACTGGGAACCGCTGTCAGCATCAGACCCAGGCTGCGGCCCCAGATGGCGGCGAGGCCGGTGA
CCCCGCCTTCAGCCGCGCACCCCGCTGCGCGCAGGTGGAGCGGGAACAGCATTGCAGCTGCGAGGCGGGA
TTCCACCTGAGCAGCACCACGGGCGGCCACAGCGTCTGCCAGGATGTGAATGAGTGTGAGATCTATGGGC
AGAAAGGACGCCCCCGGCTCTGCATGCATGCCTGTGTGAACACCCCTGGTTCCTACCGATGTACCTGCCC
GAGTGGATACCGGATCCTGGCTGATGGGAAGAGCTGTGAGGATGTTGATGAGTGTGCAGGCCCACAGCAC
ATGTGCCCCCGGGGGACCACATGCATCAACACTGGAGGAGGCTTCCAGTGTGTCAACCCTGAGTGTCCTG
AGGGCAGCGGCAATATAAGCTACGTGAAGACATCTCCCTTTCAGTGCGAGCGAAACCCTTGTCCCATGGA
CAGCAGGCCATGCCGCCACCTGCCCAAGACCATCTCCTTCCATTACCTCTCTCTCCCTTCCAAGTTGAAG
ACACCCATCACGCTCTTCCGCATGGCCACAGCCTCAATTCCTGGCCATCCTGGGCCCAACAGCCTGCGCT
TTGGGATCGTGGGTGGGAACAGCCGTGGCCACTTCGTAATGCAGCGCTCAGACCGGCAGACAGGAGAGCT
CATCCTTACACAGACCCTGGAGGGGCCTCAGACTCTGGAGGTTGACGTAGACATGTCGGAATACCTGGAG
CGCTCCTTCCAGGCCAACCATGTATCCAAGGTCACCATCTTTGTTTCTCGCTATGACTTCTGA

Translation (440 aa):
MGPGSQRALFLLLLLLASPGARAFQSCLNKQQLLTTIRQLQQLLKGQETRFTEGIRNMKSRLAALQNTVN
KMTPDAPPVSCPALEAPPDGKKFGSKYLVDHEVYFTCNPGFQLVGPSSVVCLANGSWTGEQPRCRDISEC
SSQPCHNGGTCVEGINHYRCICPPGKTGNRCQHQTQAAAPDGGEAGDPAFSRAPRCAQVEREQHCSCEAG
FHLSSTTGGHSVCQDVNECEIYGQKGRPRLCMHACVNTPGSYRCTCPSGYRILADGKSCEDVDECAGPQH
MCPRGTTCINTGGGFQCVNPECPEGSGNISYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSKLK
TPITLFRMATASIPGHPGPNSLRFGIVGGNSRGHFVMQRSDRQTGELILTQTLEGPQTLEVDVDMSEYLE
RSFQANHVSKVTIFVSRYDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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