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Report for CCDS38252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38252.1 Public Mus musculus 2 Rrbp1 23 108 98 CCDS HistoryNCBI Gene:81910Re-query CCDS DB by CCDS ID:38252.1Re-query CCDS DB by GeneID:81910See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016072.11 ENSMUSP00000016072.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016072.11Link to Ensembl Protein Viewer:ENSMUSP00000016072.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000016072Re-query CCDS DB by Protein ID:ENSMUSP00000016072
Original member Current member NCBI NM_024281.2 NP_077243.2 Accepted alive Link to Nucleotide Sequence:NM_024281.2Link to Protein Sequence:NP_077243.2Re-query CCDS DB by Nucleotide ID:NM_024281Re-query CCDS DB by Protein ID:NP_077243Link to BLAST:NP_077243.2

Chromosomal Locations for CCDS 38252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143947891 143947929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143948336 143948479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143949270 143949368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143949672 143949755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143950428 143950523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952192 143952275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143953234 143953329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143953942 143954013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143954116 143954208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143954735 143954824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143954957 143955037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143955114 143955206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143956768 143956860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143957555 143957645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143963104 143963138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143963246 143963415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143964762 143964900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143967440 143967593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143968517 143968635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143969410 143969562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143973469 143973591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143974461 143974609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143988148 143990245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4395 nt):
ATGGATATCTACGACACTCAGACCTTGGGGGTTGTGGTCTTTGGCGGGTTTATGGTTGTTTCTGCCATCG
GCATCTTCCTGGTGTCAACCTTCTCCATGAAGGAGACGTCGTATGAAGAAGCCCTTGCCAACCAGCGCAA
GGAGATGGCGAAAACTCACCACCAGAAAGGAGAGAAGAAAAAGAAGGAGAAAACCGTGGAGAAGAAAGGA
AAGACCAAGAAAAAGGAAGAGAAACCTAATGGGAAGATACCTGAACATGACCTGGATCCCAACGTGACCA
TCATCCTCAAGGAACCAGTGCGTGTATCCGCTGTGGCTGTGGCTCCAACTTCAGTCCATTCTTCTGTGGG
CCATACCCCTATAGCCACAGTACCAGCCATGCCTCAGGAAAAGCTGGCTTCCTCCCCTAAGGACAGAAAG
AAGAAGGAGAAAAAAGTGGCAAAGGTGGAGCCAGCAGTCAGTTCTATTGTGAATTCCATCCAGGTTCTTG
CTTCAAAGTCTGCCATCTTGGAAGCCACACCCAAGGAGGTGCCTATGGTGGCTGTGCCTCCAGTGGGCTC
TAAGGCCAGTTCTCCTGCCACCAGCAGTCAGGGCAAGAAGGGACAGGGAGCCCAGAACCAGGCCAAGAAG
GGGGAGGGAGCCCAGAACCAAGGCAAGAAGGGAGAGGGGGCCCAGAACCAAGCTAAGAAAGGAGAGGGGG
CCCAGAACCAGGCCAAGAAGGGGGAGGGGGCCCAGAACCAAGGCAAGAAGGGGGAGGGAGCCCAGAACCA
GGCCAAGAAGGGGGAAGGAGGCCAGAACCAGGCCAAGAAGGGGGAGGGGGCCCAGAACCAAGGCAAGAAG
GGAGAGGGGGCCCAGAACCAAGGCAAGAAGGGGGAGGGAGCCCAGAACCAGGCTAAGAAGGGGGAGGGGG
CTCAGAACCAAGCTAAGAAGGGTGAGGGGGCCCAGAACCAAGGCAAGAAGGGAGAGGGGGCCCAGAACCA
GTCCAAGAAAGGAGAGGGGGCTCAGAACCAGGCCAAGAAGGGGGAAGGGGGCCAAAACCAGGCCAAGAAG
GGAGAGGGGGCTCAGAACCAGGCCAAGAAGGGGGAGGGAGCCCAGAACCAAGCTAAGAAGGGGGAGGGGG
TCCAGAACCAGGCCAAGAAGGGGGTAGAAGGGGCCCAAAATCAGGGCAAAAAGGGGGAAGCAAACCAAAA
CCAGGCTAAGAAGGGTGAGGGAGGCCAGAACCAAACCAAGAAGGGGGAAGGACCCCAGAACCAAGGCAAG
AAGGGAGAAGCAGCTCAAAAACAGGACAAAAAAATAGAAGGAGCCCAGAATCAAGGCAAGAAGCCAGAGG
GAACCTCAAACCAAGGCAAGAAGGGGGAGGGGGCCCAGAACCAAGGCAAGAAGGGAGAGGGGGCCCAGAA
CCAAGGCAAGAAGGGAGAGGGGGCCCAGAACCAAGGCAAGAAGGGAGAGGGGGCCCAGAACCAAGGCAAG
AAGGGAGAGGGGGCCCAGAACCAAGGCAAGAAGGGAGAGGGGGCCCAAAACCAAGGCAAGAAGGGAGAGG
GGGCCCAGAACCAAGGCAAGAAGGGAGAGGGGCCCCAGAACCAGGCCAAGAAAGGAGAGGGGGCCCAGAA
CCAGGGCAAGAAAGGAGAGGGGGCCCAGAACCAGGGCAAGAAAGGAGAGGGGGCCCAGAACCAGGGCAAA
AAGGCAGAGGGGGTTCAAAGTCAGAGCAAGAAAGGGGAAGGGACCCAGAATCAGGGCAAAAAGGGGGATG
GAAATCCCAACCAAGGCAAGAAGGGGGAGGGGGCTTCCAACCAGAACAGAAAGACAGATACAGTTGCTAA
TCAGGGCACAAAGCAAGAGGGTGTCTCAAACCAGGTGAAAAAGTCAGAAGGGTCCCCTAATCAAGGTAAA
AAGGCAGAGGGAGCCCCAAACCAAGGCAAAAAGAAAGATGGATCCCCCAGCCAGGCCAAAAAAGTGGATG
CAGCTGCCAATCAGGGTAAAAAGTCAGAGATGGCTCCTGCCCAGGGTCAAAAGGCAAGCATGGTCCAGAG
CCAGGAGGCACCAAAGCAAGACGCACCTGCAAAGAAGAAGTCTGGTTCCAGGAAAAAAGGAGAGCCTGGG
CCCCCAGATTGCGACGGCCCTCTCTTCCTGCCCTACAAGACACTGGTCTCTACGGTTGGAAGCATGGTGT
TCAGTGAGGGCGAGGCCCAGCGGCTTATTGAGATTCTCTCTGAGAAGACTGGAGTCATTCAAGACACCTG
GCATAAGGCCACTCAGAAGGGTGACCCTGTAGCAATTCTGAAACGCCAACTAGAAGAGAAAGAAAAGCTG
CTGGCCACAGAGCAAGAGGATGCGGCCGTCGCCAAGAGCAAGCTAAGGGAACTCAACAAGGAGATGGCTT
CAGAGAAGGCCAAGGCTGCAGCTGGGGAGGCCAAAGTGAAGAAGCAGCTGGTAGCCCGGGAGCAGGAGAT
CGCAGCTGTGCAGGCACGCATGCAGGCCAGCTATCGGGACCATGTGAAGGAGGTGCAACAGCTGCAGGGC
AAGATCCGGACTCTTCAGGAACAGCTGGAGAATGGCCCTAACACCCAGCTGGCCCGCCTACAGCAGGAGA
ACTCCATCTTGAGGGATGCCTTGAACCAGGCTACCAGCCAGGTGGAAAGCAAGCAGAACACAGAACTGGC
AAAGCTCCGACAGGAGCTCAGCAAGGTCAACAAGGAGCTAGTGGAGAAGTCAGAGGCCTCCCGGCAGGAG
GAGCAACAACGGAAGGCGCTGGAAGCCAAGGCAGCCACCTTTGAGAAGCAGGTCCTACAGTTGCAGGCAT
CCCACAAAGAGAGTGAAGAGGCTCTGCAGAAGCGCTTGGAGGAGGTCACCCGGGAACTCTGCCGGGCACA
AACGAGCCATGCCAACCTCCGAGCGGATGCTGAAAAGGCTCAGGAACAGCAGCAGCGAGTGGCAGAGTTG
CACAGCAAATTACAGTCATCTGAGGTGGAGGTAAAAAGCAAGTGTGAAGAGCTGAGTAGTCTCCATGGGC
AGCTCAAGGAGGCCAGGGCGGAGAACTCACAGCTCACAGAGAGGATCCGTTCCATCGAAGCCCTTCTGGA
AGCAGGCCAGGCCCAAGACACCCAGGCCAGCCACGCTGAGGCCAACCAGCAGCAGACTCGTCTCAAGGAG
CTGGAGTCCCAGGTGTCGTGTCTGGAGAAGGAAACCAGTGAGCTCAAGGAGGCTATGGAACAACAGAAGG
GGAAGAACAATGACCTCCGGGAAAAGAACTGGAAGGCCATGGAGGCACTGGCCTTAGCTGAGCGGGCCTG
TGAGGAGAAGCTGCGTTCCCTAACCCAGGCCAAGGAGGAGTCAGAAAAGCAGCTGCACCTGGCTGAGGCC
CAGACCAAGGAGACCCTGCTGGCCTTGCTTCCGGGGCTCTCTATCTCAGCACACCAGAACTATGCCGAGT
GGCTACAGGAATTCAAAGAGAAGGGCTCTGAGCTGCTGAAGAAACCACCTACCCTAGAGCCCTCCATGGA
CATAGTCTTGAAGTTGAGGGAAGCTGAGGAGACCCAAAACTCTTTGCAGGCTGAGTGTGACCAGTACCGC
ACCATCCTGGCAGAGACGGAGGGCATGCTCAAAGACCTGCAGAAGAGTGTGGAGGAAGAAGAGCGAGTGT
GGAAGGCCAAGGTGGGAGCTGCTGAGGAGGAGCTGCACAAGTCACGGGTCACAGTGAAACATCTAGAAGA
CATTGTGGAGAAGCTAAAAGGAGAACTTGAAAGCTCAGATCAGGTAAGGGAGCACACATCACATCTGGAA
GCGGAGCTGGAGAAGCACATGGCAGCGGCCAGTGCAGAGTGTCAGAATTATGCCAAGGAGGTGGCAGGGT
TAAGGCAGCTTCTGCTAGAATCGCAGTCTCAGCTGGATGAAGCCAAGAGTGAAGCCCAGAAACAAAGCGA
TGAGCTTGCCCTGGTCAGGCAGCAGTTGAGTGACATGAGGAGCCACGTAGAGGATGGTGACGTGGCTGGG
TCTCCAGCTGTCCCTCCAGCCGAGCAGGACCCTATGAAGTTGAAAACACAGCTGGAGCGGACAGAAGCCA
CCCTGGAGGCTGAGCAGACACGGCGGCAGAAGCTCACAGCTGAGTTTGAGGAGGCTCAACGCACAGCGTG
TCGGATACAAGAAGAGCTGGAGAAACTCCGTGCTGCTGGCCCCCTGGAGTCGTCAGGAAAAGAAGAGATT
ACACAGCTGAAGGAGAGACTAGAAAAAGAGAAGAGGTTAACAAGTGACCTGGGCCGTGCTGCCATCAAAC
TTCAGGAGCTGTTGAAGACAACCCAGGAGCAGCTGACGAAAGAGAAGGACACAGTGAAGAAGTTACAAGA
ACAACTGGGAAAAGCAGAGGATGGTAGCAGCTCAAAGGAGGGAACCTCTGTCTGA

Translation (1464 aa):
MDIYDTQTLGVVVFGGFMVVSAIGIFLVSTFSMKETSYEEALANQRKEMAKTHHQKGEKKKKEKTVEKKG
KTKKKEEKPNGKIPEHDLDPNVTIILKEPVRVSAVAVAPTSVHSSVGHTPIATVPAMPQEKLASSPKDRK
KKEKKVAKVEPAVSSIVNSIQVLASKSAILEATPKEVPMVAVPPVGSKASSPATSSQGKKGQGAQNQAKK
GEGAQNQGKKGEGAQNQAKKGEGAQNQAKKGEGAQNQGKKGEGAQNQAKKGEGGQNQAKKGEGAQNQGKK
GEGAQNQGKKGEGAQNQAKKGEGAQNQAKKGEGAQNQGKKGEGAQNQSKKGEGAQNQAKKGEGGQNQAKK
GEGAQNQAKKGEGAQNQAKKGEGVQNQAKKGVEGAQNQGKKGEANQNQAKKGEGGQNQTKKGEGPQNQGK
KGEAAQKQDKKIEGAQNQGKKPEGTSNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGK
KGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGPQNQAKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGK
KAEGVQSQSKKGEGTQNQGKKGDGNPNQGKKGEGASNQNRKTDTVANQGTKQEGVSNQVKKSEGSPNQGK
KAEGAPNQGKKKDGSPSQAKKVDAAANQGKKSEMAPAQGQKASMVQSQEAPKQDAPAKKKSGSRKKGEPG
PPDCDGPLFLPYKTLVSTVGSMVFSEGEAQRLIEILSEKTGVIQDTWHKATQKGDPVAILKRQLEEKEKL
LATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQG
KIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQE
EQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAEL
HSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKE
LESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEA
QTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYR
TILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLE
AELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAG
SPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEI
TQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAEDGSSSKEGTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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