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Report for CCDS38300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38300.1 Public Mus musculus 2 Dlgap4 23 108 98 CCDS HistoryNCBI Gene:228836Re-query CCDS DB by CCDS ID:38300.1Re-query CCDS DB by GeneID:228836See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109566.8 ENSMUSP00000105194.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109566.8Link to Ensembl Protein Viewer:ENSMUSP00000105194.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109566Re-query CCDS DB by Protein ID:ENSMUSP00000105194
Original member Current member NCBI NM_001042488.2 NP_001035953.1 Accepted alive Link to Nucleotide Sequence:NM_001042488.2Link to Protein Sequence:NP_001035953.1Re-query CCDS DB by Nucleotide ID:NM_001042488Re-query CCDS DB by Protein ID:NP_001035953Link to BLAST:NP_001035953.1

Chromosomal Locations for CCDS 38300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156748966 156749356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156760851 156760942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156761773 156761928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156762685 156762903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGTCCTCCCGTCGGGACACTGACTCTGATACCCAGGATGCCAACGACTCCAGTTGTAAGTCATCTGAGA
GGAGTCTCCCAGACTGTACCTCACACCCCAATTCCATCAGCATTGATGCTGGCCCCCGACAGGCCCCCAA
GATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCTGCCCTGGAGGCGTCTTCGCTG
CCCCCACCCGACCCTTGGCTGGAGACTTCCTCCAGCTCCCCAGCAGAGCCCGCTCAGCCAGGGGCCTGCC
GCAGGGATGGCTACTGGTTCCTGAAGCTCCTTCAGGCAGAAACGGAGAGACTGGAAGGCTGGTGCTGCCA
GATGGACAAGGAGACCAAAGAGAACAACCTCTCTGAAGAAGTCTTAGGGAAAGTTCTCAGTGCTGTGGGC
AGCGCCCAGCTCCTGATGTCCCAGAAATTCCAGCAGTTCCGCGGCCTCTGTGAGCAGAACTTGAACCCTG
ATGCCAACCCCCGTCCGACAGCCCAGGACCTGGCAGGGTTCTGGGACCTGCTGCAGCTGTCCATTGAGGA
CATCAGCATGAAGTTCGATGAGCTCTACCACCTCAAGGCCAACAGCTGGCAGCTGGTGGAGACCCCCGAG
AAGAGGAAGGAAGAGAAGAAGCCACCCCCTCCAGTCCCGAAGAAGCCAGCCAAATCCAAGGCGGCAGTGA
GCCGCGACAAGGCCTCAGACGCGGGGGACAAGCAGCGTCAGGAGGCCAGAAAGAGACTCCTGGCCGCCAA
GCGAGCAGCGTCTGTGCGGCAGAACTCGGCCACAGAGAGTGCGGACAGCATCGAGATTTATGTCCCCGAG
GCCCAGACCAGGCTCTAA

Translation (285 aa):
MSSRRDTDSDTQDANDSSCKSSERSLPDCTSHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALEASSL
PPPDPWLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLGKVLSAVG
SAQLLMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPE
KRKEEKKPPPPVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQNSATESADSIEIYVPE
AQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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