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Report for CCDS38431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38431.1 Public Mus musculus 3 Supt20 23 108 98 CCDS HistoryNCBI Gene:56790Re-query CCDS DB by CCDS ID:38431.1Re-query CCDS DB by GeneID:56790See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170552.5 ENSMUSP00000131454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170552.5Link to Ensembl Protein Viewer:ENSMUSP00000131454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170552Re-query CCDS DB by Protein ID:ENSMUSP00000131454
Original member NCBI NM_019995.4 NP_064379.1 Updated not alive Link to Nucleotide Sequence:NM_019995.4Link to Protein Sequence:NP_064379.1Re-query CCDS DB by Nucleotide ID:NM_019995Re-query CCDS DB by Protein ID:NP_064379
Current member NCBI NM_019995.5 NP_064379.1 Accepted alive Link to Nucleotide Sequence:NM_019995.5Link to Protein Sequence:NP_064379.1Re-query CCDS DB by Nucleotide ID:NM_019995Re-query CCDS DB by Protein ID:NP_064379Link to BLAST:NP_064379.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064379.1 531 Q7TT00-2 531 100% 0 0

Chromosomal Locations for CCDS 38431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54695205 54695207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54696484 54696519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54696951 54697009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54698593 54698659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54701487 54701616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54703071 54703174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54706860 54706976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54707088 54707141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54708257 54708396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54709031 54709187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54709273 54709329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54710401 54710472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54712092 54712249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54713176 54713202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54713733 54713765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54714688 54714796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54715154 54715256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54715534 54715689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54716638 54716651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGCAACAAGCTGTAGAACAAGCTTTGGATTGCGCAGAGTACATCGTGGAAAGTGCTCAGCAGAGACCTC
CTAAAAGGAAATACCTGTCTAGTGGAAGAAAGTCTATATTTCAAAAACTTTATGACTTATATGTTGAAGA
ATGTGAAAAAGAACCCGAGGTTAAGCAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATG
CAGGAGACTTTGTCGTGTTTAGTAGTCAATCTGTACCCAGGAAATGAAGGCTATTCTCTGATGCTCAGGG
GGAAAAATGGATCAGATTCTGAGACCATCCGATTGCCTTATGAAGAAGGAGAATTGCTTGAATACTTAGA
TGCAGAAGAATTACCTCCTATTTTGGTGGATCTCCTTGAAAAATCACAGGTTAATATTTTTCATTGTGGA
TGTGTGATAGCAGAAATACGTGACTATAGGCAGTCCAGTAATATGAAGTCTCCTGGTTACCAAAGTAGGC
ACATTCTCTTACGTCCAACAATGCAGACTTTAGTCTGTGATGTCCATTCTATAACAAGTGACAACCATAA
GTGGACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTGATTCTAGCTACAGCAGAGCCACTGTGTCTT
GACCCATCGGTGGCAGTAGCGTGCACTGCCAATAGGCTGCTCTATAACCGGCAGAAGATGAACACTCGCC
CAATGAAACGGTGTTGGAAGAGGTACTCCAGGTCCTCCCTGAACCGCCAGCAGGACCTCTCTCACGGCCC
TCCTCCCCCTCAGCTGAGACTACTTGATTTCTTACAAAAGCGGAAGGAAAGGAAAGCAGGCCAGCATTAT
GACCTCAAAATTTCCAAAGCAGGAAATTGTGTAGACATGTGGAAACGGAGCCCCTGTAACTTGGCTGTGC
CTTCTGAAGTAGATGTGGAAAAATATGCTAAAGTGGAGGAATCCATCAAATCTGACGACTCACAGCCAAC
AATGTGGCCAGCTCATGATGTAAAAGACGATTATGTATTTGAATGTGAAGGTGGTAATCAGTATCAGAAA
ACAAAGCTGACCATCTTGCAGTCTCTTGGGGATCCACTTTACTATGGTAAAATACAGCCGTGGAAAGCAG
ATGAAGAAAATGACAGCCAAATGTCTCCATCCCACTCCTCTGCTGATGACCATTCAAACTGGTTTGTCAT
TGGGTCAAAGACTGACGCAGAGAGGGTAGTTAATCAATACCAGGAGTTGGTCCAGAATGAAGCCAAATGC
CCAGTGAAGATGTCACACAGCAGTAGTGGTTCAGCCGCTCTCAGTCCAGGGGAGGAGGCAGAACAGGCGG
AGACCTCGTCCATTCAGTCTTCAGTTTTGGGAAAGGGAGTAAAACACCGACCCCCACCCATCAAACTTCC
CTCAGGCTCAGGAAATAGTTCCTCAGGTAACTATTTCACAGCACAGCAGGCCAGCAGCTTCCTTAAATCT
CCAACTCCTCCTCCATCGTGTAAGCCAAGCCTTTCTCGGAAGTCTTCTGTGGACCTCAGTCAAGTTAGCA
TGCTTTCTCCTGCCGCCCTGTCCCCTGCCAGCTCATCCCAGAGACATGAAAGCTAA

Translation (531 aa):
MQQAVEQALDCAEYIVESAQQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKQKLRRNVNLLEKLVM
QETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCG
CVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCL
DPSVAVACTANRLLYNRQKMNTRPMKRCWKRYSRSSLNRQQDLSHGPPPPQLRLLDFLQKRKERKAGQHY
DLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEESIKSDDSQPTMWPAHDVKDDYVFECEGGNQYQK
TKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSNWFVIGSKTDAERVVNQYQELVQNEAKC
PVKMSHSSSGSAALSPGEEAEQAETSSIQSSVLGKGVKHRPPPIKLPSGSGNSSSGNYFTAQQASSFLKS
PTPPPSCKPSLSRKSSVDLSQVSMLSPAALSPASSSQRHES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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