NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38498.1 Public Mus musculus 3 Ubap2l 23 108 98 CCDS HistoryNCBI Gene:74383Re-query CCDS DB by CCDS ID:38498.1Re-query CCDS DB by GeneID:74383See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029553.15 ENSMUSP00000029553.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029553.15Link to Ensembl Protein Viewer:ENSMUSP00000029553.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029553Re-query CCDS DB by Protein ID:ENSMUSP00000029553
Original member Current member NCBI NM_028475.3 NP_082751.1 Accepted alive Link to Nucleotide Sequence:NM_028475.3Link to Protein Sequence:NP_082751.1Re-query CCDS DB by Nucleotide ID:NM_028475Re-query CCDS DB by Protein ID:NP_082751Link to BLAST:NP_082751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082751.1 1105 Q80X50-4 1105 100% 0 0

Chromosomal Locations for CCDS 38498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90000215 90000253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90001818 90001868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90002279 90002476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90003245 90003312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90008256 90008361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90009110 90009327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90010433 90010514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90012686 90012739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90015130 90015218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90015302 90015497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90016699 90016771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90017115 90017289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90018414 90018468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90019152 90019341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90020897 90021069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90021239 90021516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90023431 90023629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90025063 90025234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90026593 90026678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90028325 90028377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90031311 90031370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90034065 90034177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90034655 90034700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90038370 90038465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90038848 90039016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90043700 90043810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90044854 90044931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90047770 90047859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3318 nt):
ATGATGACGTCGGTGGGCACTAACCGAGCCCGGGGAAACTGGGAACAACCTCAAAACCAAAACCAGACAC
AGCACAAGCAGCGGCCACAGGCCACTGCAGAGCAAATTCGACTTGCACAGATGATTTCGGACCATAATGA
TGCTGACTTTGAGGAGAAGGTGAAACAATTGATTGATATCACAGGCAAAAACCAGGATGAATGTGTGATT
GCTTTGCATGACTGCAATGGAGATGTCAACAGAGCCATCAATGTTCTCCTGGAAGGAAATCCAGACACGC
ATTCCTGGGAGATGGTTGGGAAGAAGAAAGGAGTCTCAGGACAAAAGGATGGTGGACAAACTGAATCTAA
TGAAGAAGGAAAAGAAAATCGAGACCGGGACAGAGACTATAGTCGGCGACGTGGTGGGCCACCAAGACGG
GGGAGAGGTGCCAGCCGTGGACGAGAGTTTCGGGGCCAGGAAAATGGATTGGATGGCACCAAGAGTGGAG
GGCCTTCTGGAAGAGGCACAGACAGAGGCAGAAGAGGCCGTGGCCGTGGCAGAGGTAGTTCTGGTAGGCG
AGGAGGAAGGTTTTCTGCTCAAGGAATGGGAACCTTTAACCCAGCTGATTATGCAGAGCCAGCCAACACT
GATGATAACTATGGCAATAGCAGTGGCAATACATGGAACAACACTGGCCACTTTGAACCAGATGATGGAA
CAAGACTTGATTTCATTGGGGTTGAGGGGTCAAATTATCCCCGAAAATTTGAGACTGCTCCTGGTGCATG
GAGGACTGCAACAGAAGAGTGGGGAACTGAAGACTGGAATGAAGATCTTTCTGAGACCAAGATCTTTACC
GCCTCTAATGTGTCTTCAGTGCCTCTGCCTGCGGAGAATGTGACAATCACTGCTGGTCAGAGAATTGACC
TTGCTGTTCTGTTGGGGAAGACACCATCTTCAATGGAGAATGATTCATCTAATCTGGATCCATCTCAGGC
TCCTTCCCTGGCTCAGCCTCTGGTGTTTAGTAATTCGAAGCAGAATGCCATATCACAGCCTGCTTCAGGG
AGTACATTTTCTCACCATAGCATGGTGAGCATGTTGGGGAAAGGATTTGGTGATGTTGGGGAAGCTAAAG
GTGGCAGTACAACAGGCTCCCAGTTCTTGGAGCAATTCAAGACTGCGCAGGCCCTTGCTCAACTGGCAGC
TCAACATTCTCAATCTGGAAGCACTACCACCTCCTCTTGGGATATGGGCTCAACAACACAATCACCATCA
CTGGTGCAGTATGATCTGAAGAGTGCAAATGATTCAACAGTGCACAGTCCTTTTACAAAGCGCCAGGCAT
TCACCCCATCTTCAACCATGATGGAGGTATTCCTTCAGGAGAAGCCACCTGCAGTGGCTACCTCGACAGC
TGCACCACCTCCCCCGTCTTCTCCTCTGCCAAGCAAATCCACCTCGGCTCCACAGATGTCTCCGGGGTCT
TCAGACAACCAGTCCTCCAGCCCTCAGCCGGCTCAGCAGAAACTGAAACAGCAAAAGAAGAAAACCTCCT
TGACGTCTAAGATTCCTGCTCTGGCTGTGGAGATGCCTGGCTCAGCAGATATCTCAGGGCTAAATCTACA
GTTTGGGGCATTGCAGTTTGGGTCAGAGCCTGTCCTTTCTGATTATGAGTCCACCCCCACCACGAGCGCC
TCCTCAAGCCAGGCTCCTAGTAGCCTGTATACCAGCACGGCCAGTGAGTCTTCATCTACAGTTTCATCTA
ATCAGAGTCAGGAGTCTGGTTATCAGAGTGGCCCGATTCAGTCGACAACTTATACCTCCCAAAATAATGC
TCAGGGCCCTCTATATGAACAGAGATCCACACAGACGCGGCGGTATCCCAGCTCCATCTCTTCATCACCC
CAAAAGGACCTGACTCAGGCTAAGAATGGTTTTAGCTCTGTGCAGGCCACGCAGTTACAGACCACGCAAT
CTGTTGAAGGTGCTACAGGCTCTGCAGTGAAATCTGAATCACCTTCCACTTCTAGTATACCCTCTCTCAA
TGAAACAGTACCTGCAGCTTCCTTACTGACGACAGCCAATCAGCATTCATCCTCCTTAAGTGGCTTGAGC
CATACGGAGGAGATTCCAAATACCACCACCACACAACATAGCAGTGCATTATCTACACAGCAGAATACCC
TTTCTTCATCAACATCTTCTGGGCGTACTTCAACATCCACTCTTTTGCATACAAGTGTGGAGAGTGAGGC
AAATCTACATTCTTCCTCCAGCACCTTCTCTACCACATCCAGCACTGTCTCTGCACCTCCCCCAGTGGTC
AGTGTCTCCTCCAGTCTGAATAGTGGCAGTAGTCTGGGCCTTAGCCTGGGCAGCAACTCTACTGTCACAG
CCTCAACTCGAAGCTCAGTTGCTACAACTTCAGGAAAAGCTCCTCCCAACCTTCCTCCTGGAGTCCCGCC
ATTGTTGCCTAATCCATATATTATGGCTCCGGGGCTGTTACATGCCTATCCGCCACAAGTATATGGTTAT
GATGATTTACAGATGCTCCAGACAAGATTTCCATTGGATTACTACAGTATCCCGTTTCCCACACCCACCA
CTCCACTTACTGGGAGGGATGGTAGCCTGGCCAGCAACCCTTACTCTGGCGACCTCACCAAATTCGGCCG
CGGGGATGCCTCCTCCCCAGCCCCAGCCACAACCTTGGCCCAACCCCAACAGAACCAGACGCAGACTCAC
CACACCACGCAGCAGACATTCCTGAACCCGGCGCTGCCTCCTGGCTATAGTTACACCAGCCTGCCATACT
ACACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTATGGGCCTGCTGTGTTCCCTGTGGCTCCTACCTC
TTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCCTCGGCTACCCCTTTCCAACAGCCAAGTGGATAT
GGGTCTCATGGATACAACACTGGTGTGTCAGTCACCTCCAGTAACACGGGCGTGCCAGATATATCCGGTT
CTGTGTACTCCAAAACCCAGCAGTCCTTTGAGAAACAAGGGTTTCATTCCGGTACTCCTGCTGCCTCCTT
CAACTTGCCTTCAGCCCTAGGAAGTGGAGGGCCCATCAATCCAGCCACAGCTGCTGCCTACCCACCTGCC
CCCTTTATGCATATTCTGACCCCACATCAGCAGCCACACTCTCAGATCCTTCACCATCACCTGCAGCAGG
ATGGCCAGCTACCATATTTGCAGATGATTCTCTGTTGCCAGCGCCAGCAGGAGGAGCAGGATATCCTCAC
TCTCGTCGATGACCAGCTTGGTGAATAA

Translation (1105 aa):
MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVI
ALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRR
GRGASRGREFRGQENGLDGTKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANT
DDNYGNSSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFT
ASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASG
STFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPS
LVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGS
SDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSA
SSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSP
QKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSSLSGLS
HTEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSAPPPVV
SVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGY
DDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTH
HTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGY
GSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
PFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILTLVDDQLGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH