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Report for CCDS38690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38690.1 Public Mus musculus 4 Asph 23 108 98 CCDS HistoryNCBI Gene:65973Re-query CCDS DB by CCDS ID:38690.1Re-query CCDS DB by GeneID:65973See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078139.12 ENSMUSP00000077273.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078139.12Link to Ensembl Protein Viewer:ENSMUSP00000077273.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078139Re-query CCDS DB by Protein ID:ENSMUSP00000077273
Original member Current member NCBI NM_023066.3 NP_075553.2 Accepted alive Link to Nucleotide Sequence:NM_023066.3Link to Protein Sequence:NP_075553.2Re-query CCDS DB by Nucleotide ID:NM_023066Re-query CCDS DB by Protein ID:NP_075553Link to BLAST:NP_075553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075553.2 741 Q8BSY0-1 741 100% 0 0

Chromosomal Locations for CCDS 38690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9453295 9453445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9474898 9475031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9475390 9475481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9484472 9484607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9508627 9508764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9514589 9514678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9517636 9517734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9529886 9530022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9531915 9532065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9537679 9537765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9542225 9542310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9583812 9583856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9594663 9594698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9595377 9595415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9598269 9598301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9598733 9598780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9601307 9601363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9602469 9602501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9604516 9604629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9607797 9607871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9610843 9610938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9635901 9635969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9639198 9639347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9668781 9668910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGGCCCCGCGCAAGAACGCCAAGGGCGGCGGCGGCAACAGCAGCAGCAGCGGCAGCGGCAGCGGCTCGG
GCAGCGGTAGCCCGAGCACGGGTAGCAGCGGTAGCAGCAGTAGCCCCGGGGCTCGGAGAGAGGCAAAGCA
CGGAGGACACAAGAATGGGAGAAGAGGAGGGATTTCAGGAGGGTCCTTTTTCACATGGTTCATGGTCATT
GCATTGCTCGGCGTCTGGACATCTGTGGCTGTCGTGTGGTTTGACTTGGTCGATTATGAAGAAGTTCTAG
GAAAACTAGGAGTCTATGATGCGGATGGCGATGGAGACTTTGATGTGGATGATGCCAAAGTTTTATTAGG
CCTTAAAGAAAGATCTCCTTCTGAGAGGACATTTCCACCGGAGGAGGAGGCAGAGACTCACGCTGAGCTG
GAGGAGCAGGCCCCTGAGGGGGCAGACATCCAGAATGTTGAAGATGAAGTAAAGGAACAAATTCAGTCCC
TTCTTCAGGAATCAGTACACACAGACCATGACCTTGAAGCAGATGGGCTGGCAGGAGAACCACAGCCGGA
GGTTGAGGACTTCCTCACAGTGACCGACAGTGATGACAGATTTGAGGACCTGGAACCCGGGACAGTTCAT
GAAGAAATCGAGGATACTTACCATGTGGAAGACACAGCATCGCAGAACCATCCAAATGACATGGAAGAGA
TGACGAATGAGCAGGAAAATTCAGATCCCAGTGAAGCAGTGACAGATGCAGGTGTGCTGCTGCCCCATGC
AGAGGAAGTAAGACACCAAGACTATGATGAACCAGTATATGAACCCTCAGAGCATGAAGGGGTCGCGATT
TCAGATAACACCATAGATGATTCCAGCATAATCTCAGAAGAAATAAATGTCGCCTCTGTTGAAGAACAGC
AAGACACACCACCAGTTAAGAAGAAGAAGCCTAAACTTCTGAACAAATTTGATAAGACAATTAAGGCTGA
GCTGGATGCTGCAGAAAAGCTCCGGAAAAGGGGTAAAATTGAGGAAGCAGTGAACGCATTTGAAGAACTG
GTTCGAAAGTACCCTCAGAGCCCACGAGCAAGATATGGCAAAGCGCAGTGTGAAGATGACTTGGCAGAGA
AGCAGAGAAGCAATGAGGTTCTGCGCAGGGCCATCGAGACCTACCAGGAGGCAGCCGACCTGCCTGATGC
CCCTACAGACCTGGTGAAGCTGAGCTTGAAGCGAAGGTCGGAACGGCAGCAGTTTCTAGGTCACATGAGA
GGTTCTCTACTTACCCTCCAGAGACTAGTTCAACTGTTCCCTAGTGATACTACCTTAAAAAACGACCTTG
GCGTAGGATACCTCTTGTTGGGAGACAACGACAGTGCCAAGAAGGTTTACGAAGAGGTGCTAAATGTGAC
ACCAAATGATGGCTTCGCTAAAGTGCATTACGGCTTCATCCTGAAGGCACAGAACAAGATATCTGAGAGC
ATTCCCTACTTAAAGGAAGGAATCGAATCTGGGGACCCTGGCACGGATGATGGCCGGTTTTACTTCCACT
TGGGGGATGCCATGCAGAGGGTCGGGAACAAAGAGGCATATAAGTGGTATGAACTTGGGCACAAGAGAGG
ACATTTTGCCTCTGTCTGGCAGCGTTCCCTCTACAATGTGAATGGTCTGAAGGCTCAGCCGTGGTGGACA
CCCAGGGAGACTGGCTACACAGAGCTAGTGAAGTCTTTAGAGAGAAACTGGAAGTTAATCCGTGATGAAG
GCCTCATGGTGATGGATAAAGCCAAGGGTCTCTTCCTGCCTGAGGACGAAAACCTTCGGGAGAAGGGCGA
CTGGAGCCAGTTCACACTGTGGCAGCAAGGAAGGAAGAATGAGAATGCCTGTAAAGGAGCGCCTAAGACC
TGTGCTTTACTAGAAAAGTTTTCCGAAACAACAGGATGCAGAAGAGGACAGATCAAATACTCCATCATGC
ACCCTGGAACTCATGTGTGGCCGCATACAGGACCCACAAACTGCAGGCTCCGAATGCATCTGGGGTTAGT
GATCCCCAAGGAAGGCTGCAAGATCCGGTGTGCCAATGAGACCAGGACGTGGGAAGAAGGCAAGGTGCTC
ATCTTTGATGACTCTTTTGAGCACGAGGTTTGGCAGGATGCCTCGTCTTTCCGGCTGATATTCATCGTGG
ATGTGTGGCACCCCGAGCTGACCCCTCAGCAGAGACGCAGCCTTCCCGCAATTTGA

Translation (741 aa):
MAPRKNAKGGGGNSSSSGSGSGSGSGSPSTGSSGSSSSPGARREAKHGGHKNGRRGGISGGSFFTWFMVI
ALLGVWTSVAVVWFDLVDYEEVLGKLGVYDADGDGDFDVDDAKVLLGLKERSPSERTFPPEEEAETHAEL
EEQAPEGADIQNVEDEVKEQIQSLLQESVHTDHDLEADGLAGEPQPEVEDFLTVTDSDDRFEDLEPGTVH
EEIEDTYHVEDTASQNHPNDMEEMTNEQENSDPSEAVTDAGVLLPHAEEVRHQDYDEPVYEPSEHEGVAI
SDNTIDDSSIISEEINVASVEEQQDTPPVKKKKPKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFEEL
VRKYPQSPRARYGKAQCEDDLAEKQRSNEVLRRAIETYQEAADLPDAPTDLVKLSLKRRSERQQFLGHMR
GSLLTLQRLVQLFPSDTTLKNDLGVGYLLLGDNDSAKKVYEEVLNVTPNDGFAKVHYGFILKAQNKISES
IPYLKEGIESGDPGTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWT
PRETGYTELVKSLERNWKLIRDEGLMVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRKNENACKGAPKT
CALLEKFSETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETRTWEEGKVL
IFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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