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Report for CCDS38692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38692.1 Public Mus musculus 4 Dpy19l4 23 108 98 CCDS HistoryNCBI Gene:381510Re-query CCDS DB by CCDS ID:38692.1Re-query CCDS DB by GeneID:381510See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084892.11 ENSMUSP00000081954.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084892.11Link to Ensembl Protein Viewer:ENSMUSP00000081954.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084892Re-query CCDS DB by Protein ID:ENSMUSP00000081954
Original member NCBI NM_001081201.1 NP_001074670.1 Updated not alive Link to Nucleotide Sequence:NM_001081201.1Link to Protein Sequence:NP_001074670.1Re-query CCDS DB by Nucleotide ID:NM_001081201Re-query CCDS DB by Protein ID:NP_001074670
Current member NCBI NM_001081201.2 NP_001074670.1 Accepted alive Link to Nucleotide Sequence:NM_001081201.2Link to Protein Sequence:NP_001074670.1Re-query CCDS DB by Nucleotide ID:NM_001081201Re-query CCDS DB by Protein ID:NP_001074670Link to BLAST:NP_001074670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074670.1 722 A2AJQ3-1 722 100% 0 0

Chromosomal Locations for CCDS 38692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11265778 11265942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11267613 11267771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11273007 11273139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11276864 11276946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11277929 11277985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11281004 11281124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11285054 11285173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11287475 11287633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11289670 11289743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11290191 11290289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11290391 11290522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11292554 11292688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11295936 11296059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11303312 11303457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11303947 11304068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11304300 11304390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11309366 11309490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11317073 11317180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11322000 11322015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGCAAAGGAAGAAGGAACATCTGTAGAACCCCGCCAAAGGAAAAAGCAAAGAACTTCAGGAAGTCAGG
AAGCCAAAGCAGAGAAGATCCGCAGAACCCCAGCTCCTGAAAGAGCTCCAAAATATGTGTCATTTCAACG
TTTTGCAAAGATCGTCATTGGCTGTCTCGCAGCCGTTATTAGTGGTATGATGCATGTTTTCTACTTGTCA
GCTTACCATGAACGGAAATTCTGGTTTTCCAACAGGCAGGAGCTCGAGCGAGAGATCACCTTCCAGGGAG
ACAGCGCTATTTACTACTCCTACTATAAAGACATGCTGAAGGCGCCGTCATTCGAGAGAGGTGTTTATGA
GCTGACGCACAATAACAAAACCATCTCCCTGAAGACTATCAACGCCATGCAACAGATGTCTTTGTACCCA
GAACTTATTGCCAGTGTTCTCTATCAAGCAACTGGCAGCAATGAAGTGATCGAACCAGTGTATTTCTACA
TTGGCATTGTGTTTGGATTACAAGGAATGTATGTCACGGCTTTGTTTGTTACAAGTTGGCTTATGAGTGG
CACGTGGCTAGCAGGGATGCTTACTGTTGCGTGGTTCCTAATTAACAGGGTGGACACAACAAGAATCGAG
TACTCCATTCCTTTAAGAGAAAACTGGGCTCTACCGTATTTTGCATGCCAAGTTGCTGCACTTACAGGCT
ATTTAAAAAGAAATCTAAATACTTATGCAGAGAGGTTTTGCTACCTGTTGCTGAGTACCTCGACGTACAC
TTTCATGATGGTGTGGGAGTACAGCCACTACGTCTTGTTTCTTCAGGCAGTATCCCTGCTGCTGCTAGAT
ATCTTCTCAGTGGAACAAAGTGACAAGGTTTATGAAGTATATAAAGTCTACATATTTTCTCTCTTCCTTG
GGTATTTACTACAGTTTGAGAATCCAGCTTTATTGGTGTCTCCTTTATTAAGTTTAGTAGGAGCGTTCAT
GCTTGTTAAGTGCCTTCAGCTGAATGGGAAAAAAGGAACTTTTGTGGCTAAAGTAATCAAAGTGTTTGAG
TTTTACTTGTTATGTACCCTGCCGGTGACCTTGAATCTTATAGTGAAGATGTTTGTCCCACACAAAGAAA
ATGAGCATGTGCTGAAATTTCTTGAAGTCAAATTTGGACTAAATATGACTAAGAATTTCACACTGAACTG
GCTCCTTTGTCAAGAGTCTCTCCAGGCGCCGTCCCAGGATTTTTTTTTCCGATTGACCCAATCTTCCCTG
TTGCCATTCTATGTTTTAGTGTTAATTATTTGTCTTCTTTCTATGACACAAGTCTTTTTTAGAAGGATGA
GTGGTAAGTCTAAGAAAGAAACTGTAACTCTTGAAGACGGAAGAATTGGAGAAAGGCCAGAAATAATTTA
TCATGTAATTCACACTCTGTTGCTGGGCTCTCTTGCCATGCTTATGGAAGGCTTGAAATTCATTTGGACT
CCTTACGTGTGCATGTTGGCCGCGTTTGGTGTATGTTCCCCCGAACTTTGGATGACACTTTTAAAGTGGC
TTCGATTAAGAACTGTACACCCAATGTTGTTGGCTCTTATTCTGAGCATGGCGGTACCCACTATTATAGG
TCTTAGTTTATGGAAAGAGTTTTTTCCACGATTAATTACAGAATTAACAGAACTACAGGAATTCTATGAT
CCAGATACAGTGGAACTTATGACCTGGATAAAGAGGCAAGCTCCAGTTGCAGCTGTGTTCGCAGGAAGCC
CACAGTTGATGGGTGTGATTAAGCTGTGTACTGGGTGGACAGTGACAAGCCTGCCACTTTACAGCGATGA
TGACCTGCTCCAGAGAAATGAAAATATTTACCAAATCTATTCAAAGCGATCTGCTGAGGATATTTATAAA
ATCCTGACATCTTATAAAGCTAACTACCTAATTGTAGAAGATGCCATCTGCAATGAGCTGGGAACCACGA
GAGGCTGTCGGGTTAAAGACTTACTAGATATTGCAAATGGACATGTGGTTTTCGAAGAAGGTGACAAATT
AACCTATTCAAAATATGGACGATTTTGTCATGAGGTCAAAATTAACTATTCTCCATATGTGAATTACTTC
ACTAGAGTATACTGGAACAGATCCTACTTTGTATATAAAGTCAACACTGTGATTTCCTTCCAATCTTGA

Translation (722 aa):
MAKEEGTSVEPRQRKKQRTSGSQEAKAEKIRRTPAPERAPKYVSFQRFAKIVIGCLAAVISGMMHVFYLS
AYHERKFWFSNRQELEREITFQGDSAIYYSYYKDMLKAPSFERGVYELTHNNKTISLKTINAMQQMSLYP
ELIASVLYQATGSNEVIEPVYFYIGIVFGLQGMYVTALFVTSWLMSGTWLAGMLTVAWFLINRVDTTRIE
YSIPLRENWALPYFACQVAALTGYLKRNLNTYAERFCYLLLSTSTYTFMMVWEYSHYVLFLQAVSLLLLD
IFSVEQSDKVYEVYKVYIFSLFLGYLLQFENPALLVSPLLSLVGAFMLVKCLQLNGKKGTFVAKVIKVFE
FYLLCTLPVTLNLIVKMFVPHKENEHVLKFLEVKFGLNMTKNFTLNWLLCQESLQAPSQDFFFRLTQSSL
LPFYVLVLIICLLSMTQVFFRRMSGKSKKETVTLEDGRIGERPEIIYHVIHTLLLGSLAMLMEGLKFIWT
PYVCMLAAFGVCSPELWMTLLKWLRLRTVHPMLLALILSMAVPTIIGLSLWKEFFPRLITELTELQEFYD
PDTVELMTWIKRQAPVAAVFAGSPQLMGVIKLCTGWTVTSLPLYSDDDLLQRNENIYQIYSKRSAEDIYK
ILTSYKANYLIVEDAICNELGTTRGCRVKDLLDIANGHVVFEEGDKLTYSKYGRFCHEVKINYSPYVNYF
TRVYWNRSYFVYKVNTVISFQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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