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Report for CCDS38693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38693.1 Public Mus musculus 4 Virma 23 108 98 CCDS HistoryNCBI Gene:66185Re-query CCDS DB by CCDS ID:38693.1Re-query CCDS DB by GeneID:66185See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108307.2 ENSMUSP00000103943.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108307.2Link to Ensembl Protein Viewer:ENSMUSP00000103943.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108307Re-query CCDS DB by Protein ID:ENSMUSP00000103943
Original member Current member NCBI NM_001081183.1 NP_001074652.1 Accepted alive Link to Nucleotide Sequence:NM_001081183.1Link to Protein Sequence:NP_001074652.1Re-query CCDS DB by Nucleotide ID:NM_001081183Re-query CCDS DB by Protein ID:NP_001074652Link to BLAST:NP_001074652.1

Chromosomal Locations for CCDS 38693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11486043 11486105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11494764 11494879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11498740 11498826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11501309 11501357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11505442 11505610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11506954 11507076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11507907 11508179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11513028 11514168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11516829 11516978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11518926 11519414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11521105 11521259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11522853 11522935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11526347 11526440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11526595 11527139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11527648 11527883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11528538 11528790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11530828 11531045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11534189 11534321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11539910 11540062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11540481 11540641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11542107 11542203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11544831 11544997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11545969 11546300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11548731 11548874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11549545 11549699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5586 nt):
ATGGCGGTGGACTCGTCTATGGAGCTGCTATTTTTAGATACTTTTAAACATCCGAGCGCTGAGCAAAGTT
CTCATATAGATGTGGTTCGTTTTCCGTGTGTGGTTTATATCAATGAAGTCCGAGTTATACCCCCGGGAGT
ACGAGCCCATAGTGGCTTACCTGACAACAGAGCATATGGGGAAACATCTCCTCACACATTTCAACTTGAC
TTATTCTTCAATAATGTAAGCAAACCAAGTGCTCCAGTTTTTGATAGGTTGGGAAGCCTGGAATATGATG
AGAATACGTCTATCATCTTTAGACCAAACTCGAAGGTAAATACTGATGGTCTGGTACTAAGAGGCTGGTA
CAACTGTCTGACCCTGGCAATATATGGATCGGTAGATAGAGTGATAAGCCATGACAGAGACTCTCCACCA
CCTCCACCTCCACCTCCACCTCCTCCCCAGCCACAGCCGACTTTGAAAAGGAATCTAAAGCATGCTGATG
GTGAGAAGGAAGATCAGTTTAATGGAAGTCCTCCAAGACCCCAGCCACGGGGACCAAGAACTCCTCCTGG
ACCTCCTCCACCTGATGACGATGAGGACGACCCTATGTCTTTGCCAGTGTCTGGTGACAAAGAAGAGGAT
GTTCCCCATCGAGAAGATTACTTTGAGCCCATTTCTCCTGATAGGAATTCTGTCCCGCAGGAAGGTCAGT
ATTCCGATGAAGGAGAGGTAGAAGAGGAACCGCAAGAAGAGGGAGAAGATGATGAAGATGATGTGGATGT
AGAGGAAGAAGAGGATGAAGATGAGGATGACTGCCATACAGTAGATAGTATCCCTGATGATGAGGAAGAA
GATGAAGAGGAAGAAGGTGAAGAGGATGAAGAAGGTGAAGGGGACGATGGCTACGAGCAGATCTCTAGTG
ATGAAGATGGAATTGCTGACTTGGAACGTGAAACATTCAAGTATCCAAACTTCGATGTTGAGTATACTCC
AGAAGACCTGGCATCTGTCCCTCCTATGACGTATGACCCGTATGACAGGGAGCTGGCACCACTCTTGTAT
TTCAGCTGTCCATACAAAACTACTTTTGAAATTGAAATCAGTAGAATGAAGGATCAAGGTCCAGATAAAG
AGAATTCAGGGGCAGTAGAAGCCTCGGTGAAGTTAACTGAACTGCTAGACCTGTATCAGGAAGACAGGGG
TGCAAAGTGGGTGACGGCTCTAGAAGAAATTCCAAGTCTAATTATAAAAGGATTAAGCTATTTGCAATTG
AAAAACACAGAACAAGACTCCCTTGGCCAGTTGGTAGACTGGACAATGCAAGCTTTAAATTTACAAGTAG
CCTTTCGACAGCCCATAGCCTTAAATGTCCGACAGCTCAAAGCTGGGACCAAGCTAGTGACCTCATTAGC
AGAATGTGGGGCTCCAGGAGTCACAGAATTGCTACAAGCAGGAGTGATCAATGTATTGTTTGATCTCTTA
TTTGCTGATCATGTCTCATCTTCCCTTAAGTTAAATGCTTTTAAAGCTTTGGACAGTGTCATTAGCATGA
CAGAAGGAATGGAGGCTTTTTTAAGAAGCACCCAAAATGAGAAAAGTGGCTATCAAAGACTTCTGGAACT
CATACTTCTGGATCAGACTGTGAGGGTTGTCACTGCTGGCTCAGCTATTCTTCAAAAATGCCATTTCTAT
GAAATCTTGTCAGAGATTAAAAGACTTGGTGACCACATAGCAGAGAAGACTTCAGCTGTTCCTAACCACA
GTGAGCCTGACCAGGACACAGATGCTGTGCTGGAGAGAGCAAATCCCGATTATGAGAATGAAGTAGAAGC
TTCTATGGACATGGATCTTTTGGAGTCCTCAATTATAAGTGAAGGTGAAATAGAAAAGCTTACTAATCTC
TTAGAGGAGGTTTTTCATGTCATGGAAACTGCACCTCATACAATGACCCAACCTCCTGTCAAGTCTTTCC
CCACAATAGCCCGGATTACCGGGCCTCCAGAGCGGGATGACCCGTACCCTGTCCTCTTTAGAGGGCCTGG
GTTTGGTTTTCAGCACTCAATAGTGGCTCACAGCCATCAGCTACTCCAGTTCCAGAGGGTCCAGTGCCCT
CTTCTGGCCTATGTGGGCACTGTACACACATGGTACATAGACACATGCAAGCAAAATACTCATGACATAA
GGTATCTTCACAGCCATCACTTCCTGGAGTTGGTCACCTTGCTTCTGTCGATTCCAATAACAAGTGCCCA
TCAGGGTGTACTGCAAGCCACGAAGGATGTTTTAAAGTTTCTTGCACAGTCACAAAAGGGCCTTCTCTTT
TTTATGTCAGAATATGAAGCGACAAACTTGTTGATCCGAGCTCTGTGCCACCTTTATGATCAAGACGAAG
AGGAAGGCCTTCAGTCTGATGGGGCTGATGATGCCTTTGCCTTGTGGCTGCAGGACTCAACTCAGACTCT
GCAGTGCATCACAGAGCTGTTCAGCCATTTCCAGCGGTGTACAGCCAGTGAAGAAACTGACCATTCTGAT
CTCCTGGGCACCCTCCACAATCTTTACTTGATTACTTTTAACCCTGTGGGAAGATCAGCTGTTGGCCATG
TTTTCAGCCTTGACAAAAACCTTCAAAGTCTCATTACTCTAATGGAGTACTATTCCAAAGAAGCCCTAGG
CGATTCCAAGTCTAAGAAGTCAGTAGCTTATAATTACGCATGCGTACTCACGCTGGTGGTGGCTCAGTCT
TCCAGCGGTGTCCAGATGTTAGAACAGCACGCAGCATCGCTCTTGAAGCTCTGCAAAGCAGATGAAAATA
ATGCGAAATTGCAAGAACTTGGCAAATGGCTTGAACCTCTGAAAAACCTCAGATTTGAAATTAACTGCAT
CCCAAATCTAATTGAATATGTTAAACAGAATATTGATAACTTGATGACTGCAGAAGGAGTTGGCCTTACC
ACTGCCTTACGTGTTCTCTGTAATGTGGCATGTCCACCACCTCCCGTAGAAGGTCAGCAGAAAGACCTGA
AATGGAACCTTGCTGTTATTCAGCTTTTTTCTGCTGAAGGAATGGACACCTTTATTCGGGTTCTGCAAAA
ACTGAACAGTATTTTGACGCAGCCTTGGAGGCTCCATGTGAACATGGGGACTACCCTGCACAGAGTCACT
ACCATTTCAATGGCTCGCTGCACGCTCACTCTGCTTAAAACTATGCTGACAGAGCTCCTGCGAGGCGGAT
CCTTTGAGTTTAAGGACATGCGTGTTCCTTCAGCACTTGTTACTTTACACATGCTCCTGTGCTCTATCCC
TCTCTCAGGTCGTTTGGATAGTGATGAGCAGAAAATTCAGAATGATATCATAGATATCTTACTGACTTTT
ACACAAGGAGTCAATGAGAAGCTCACGATCTCGGAAGAGACTCTGGCCAATAATACTTGGTCTTTAATGT
TAAAGGAAGTTCTCTCTTCCATCTTGAAGGTTCCGGAAGGCTTCTTCTCAGGACTCATACTCCTTTCAGA
GCTGCTGCCTCTTCCCTTGCCCATGCAGACCACGCAGGTTATTGAGCCACATGATATATCAGTGGCACTC
AACACCCGAAAATTGTGGAGCATGCACCTTCATGTTCAAGCAAAGTTGCTCCAAGAAATAGTTCGTTCTT
TCTCTGGCACAACCTGCCAGCCCATTCAACATATGTTACGGCGTATTTGTGTTCAATTGTGTGACCTTGC
CTCTCCAACTGCTCTTCTGATCATGAGAACTGTGTTGGATTTGATTGTAGAAGACTTGCAAAGCACTTCA
GAAGATAAAGAAAAACAGTATACTAGCCAAACCACCAGGTTGCTTGCTCTTCTCGATGCCCTGGCTTCAC
ACAAAGCTTGTAAATTAGCTATTTTGCATCTAATTAATGGAACTATTAAAGGCGATGAAAGATATGCAGA
GATCTTCCAGGATCTTTTAGCTTTGGTGCGCTCTCCTGGGGACAGTGTTACTCGCCAGCAGTGCGTGGAG
TATGTCACATCCATTTTGCAGTCTCTCTGTGACCAGGACATTGCACTCATTTTGCCAAGCCCTTCTGAAG
GTCCTGCCTCTGAGCTTGAACAGCTCTCTAACTCCCTACCAAGTAAAGAGCTGATGACTGCAATCTGCGA
CTGTCTGCTGGCAACTCTAGCCAACTCTGAAAGCAGTTACAACTGTCTGCTGACATGTGTCCGTACAATG
ATGTTTCTTGCAGAGCACGATTATGGATTGTTTCACCTGAAAAGCTCTTTAAGGAAGAACAGTAGTGCTC
TGCATAGTTTGCTGAAGCGAGTGGTCAGCACATTCAGTAAGGACACCGGTGAGCTTGCATCGGCGTCTCT
GGACTTCATGAGACAGATCCTCAATGCTGATGCTATGGGCTGTTGTGGAGACGATAGTGGTCTCATGGAG
GTAGAGGGCGCTCACCCACCCCGGACGATGAGTCTTAACGCTGCAGAGTTAAAACAGCTCCTACAGAGCA
AAGAAGAGAGTCCAGAGAGTCTGTTCCTTGAACTAGAGAAGCTTGTTTTGGAACATTCTAAAGATGATGA
CAGTCTGGAGTCTTTGCTGGATAATGTAATTGGACTGAAGCAGATGCTGGAGTCATCTGGTGAGCCTTTG
CCTCTCAGTGACCAAGATGTAGAGCCAGTACTGTCAGCTCCAGAGTCTCTCCAGAATTTATTTAACAACA
GGACTGCATATGTGTTGGCTGATGTCATGGATGATCAGTTGAAATCTATGTGGTTTACTCCATTTCAGGC
TGAAGAGATCGATACAGACTTGGATTTGGTAAAGGTTGACTTAATTGAGCTTTCAGAAAAGTGCTGCAGT
GATTTTGATTTGCATTCAGAACTAGAGCGCTCGTTTCTGTCAGAACCATCATCTCCAGGAAGATCCAAGA
CTACTAAGGGATTTAAACTCGGGAAGCATAAGCATGAGACATTCATAACTTCAAGTGGAAAATCTGAATA
CATTGAACCTGCCAAACGAGCTCATGTTGTGCCGCCACCTAGAGGCCGGGGCCGGGGAGGATTTGGACAG
GGCATACGGCCCCATGATATTTTCCGTCAGAGAAAGCAGAACACGAGCAGGCCGCCATCTATGCACGTGG
ATGACTTTGTTGCAGCTGAAAGTAAAGAAGTGGTCCCTCAAGATGGAATACCCCCACCAAAACGGCCACT
CAAAGTCTCACAAAAGATTTCCTCTCGTGGTGGATTTTCAGGCAACCGAGGAGGACGGGGTGCTTTTCAT
AGTCAGAACAGGTTTTTCACACCGCCTGCTTCGAAAGGAAACTACAGTCGTCGGGAAGGAACAAGAGGCT
CGAGTTGGAGTGCTCAGAACACTCCTCGAGGAAATTATAATGAAAGCCGAGGGGGCCAGAGCAACTTTAA
CAGGGGTCCTCTTCCACCATTACGGCCGCTTAGTTCTACGGGTTACCGCCCTAGTCCCCGGGATCGAGCT
TCTAGAGGCCGCGGGGGCCTGGGACCGTCCTGGGCTAGTACAAATAGCGGCAGTGGAGGCTCGAGAGGAA
AGTTTGTTAGTGGAGGCAGTGGTAGAGGCCGTCATGTACGGTCCTTTACTCGATAG

Translation (1861 aa):
MAVDSSMELLFLDTFKHPSAEQSSHIDVVRFPCVVYINEVRVIPPGVRAHSGLPDNRAYGETSPHTFQLD
LFFNNVSKPSAPVFDRLGSLEYDENTSIIFRPNSKVNTDGLVLRGWYNCLTLAIYGSVDRVISHDRDSPP
PPPPPPPPPQPQPTLKRNLKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDDDEDDPMSLPVSGDKEED
VPHREDYFEPISPDRNSVPQEGQYSDEGEVEEEPQEEGEDDEDDVDVEEEEDEDEDDCHTVDSIPDDEEE
DEEEEGEEDEEGEGDDGYEQISSDEDGIADLERETFKYPNFDVEYTPEDLASVPPMTYDPYDRELAPLLY
FSCPYKTTFEIEISRMKDQGPDKENSGAVEASVKLTELLDLYQEDRGAKWVTALEEIPSLIIKGLSYLQL
KNTEQDSLGQLVDWTMQALNLQVAFRQPIALNVRQLKAGTKLVTSLAECGAPGVTELLQAGVINVLFDLL
FADHVSSSLKLNAFKALDSVISMTEGMEAFLRSTQNEKSGYQRLLELILLDQTVRVVTAGSAILQKCHFY
EILSEIKRLGDHIAEKTSAVPNHSEPDQDTDAVLERANPDYENEVEASMDMDLLESSIISEGEIEKLTNL
LEEVFHVMETAPHTMTQPPVKSFPTIARITGPPERDDPYPVLFRGPGFGFQHSIVAHSHQLLQFQRVQCP
LLAYVGTVHTWYIDTCKQNTHDIRYLHSHHFLELVTLLLSIPITSAHQGVLQATKDVLKFLAQSQKGLLF
FMSEYEATNLLIRALCHLYDQDEEEGLQSDGADDAFALWLQDSTQTLQCITELFSHFQRCTASEETDHSD
LLGTLHNLYLITFNPVGRSAVGHVFSLDKNLQSLITLMEYYSKEALGDSKSKKSVAYNYACVLTLVVAQS
SSGVQMLEQHAASLLKLCKADENNAKLQELGKWLEPLKNLRFEINCIPNLIEYVKQNIDNLMTAEGVGLT
TALRVLCNVACPPPPVEGQQKDLKWNLAVIQLFSAEGMDTFIRVLQKLNSILTQPWRLHVNMGTTLHRVT
TISMARCTLTLLKTMLTELLRGGSFEFKDMRVPSALVTLHMLLCSIPLSGRLDSDEQKIQNDIIDILLTF
TQGVNEKLTISEETLANNTWSLMLKEVLSSILKVPEGFFSGLILLSELLPLPLPMQTTQVIEPHDISVAL
NTRKLWSMHLHVQAKLLQEIVRSFSGTTCQPIQHMLRRICVQLCDLASPTALLIMRTVLDLIVEDLQSTS
EDKEKQYTSQTTRLLALLDALASHKACKLAILHLINGTIKGDERYAEIFQDLLALVRSPGDSVTRQQCVE
YVTSILQSLCDQDIALILPSPSEGPASELEQLSNSLPSKELMTAICDCLLATLANSESSYNCLLTCVRTM
MFLAEHDYGLFHLKSSLRKNSSALHSLLKRVVSTFSKDTGELASASLDFMRQILNADAMGCCGDDSGLME
VEGAHPPRTMSLNAAELKQLLQSKEESPESLFLELEKLVLEHSKDDDSLESLLDNVIGLKQMLESSGEPL
PLSDQDVEPVLSAPESLQNLFNNRTAYVLADVMDDQLKSMWFTPFQAEEIDTDLDLVKVDLIELSEKCCS
DFDLHSELERSFLSEPSSPGRSKTTKGFKLGKHKHETFITSSGKSEYIEPAKRAHVVPPPRGRGRGGFGQ
GIRPHDIFRQRKQNTSRPPSMHVDDFVAAESKEVVPQDGIPPPKRPLKVSQKISSRGGFSGNRGGRGAFH
SQNRFFTPPASKGNYSRREGTRGSSWSAQNTPRGNYNESRGGQSNFNRGPLPPLRPLSSTGYRPSPRDRA
SRGRGGLGPSWASTNSGSGGSRGKFVSGGSGRGRHVRSFTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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