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Report for CCDS38823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38823.1 Public Mus musculus 4 Prame62 23 108 98 CCDS HistoryNCBI Gene:381536Re-query CCDS DB by CCDS ID:38823.1Re-query CCDS DB by GeneID:381536See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106914.7 ENSMUSP00000102527.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106914.7Link to Ensembl Protein Viewer:ENSMUSP00000102527.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106914Re-query CCDS DB by Protein ID:ENSMUSP00000102527
Original member Current member EBI ENSMUST00000106915.3 ENSMUSP00000102528.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106915.3Link to Ensembl Protein Viewer:ENSMUSP00000102528.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106915Re-query CCDS DB by Protein ID:ENSMUSP00000102528
Original member Current member NCBI NM_001085520.2 NP_001078989.1 Accepted alive Link to Nucleotide Sequence:NM_001085520.2Link to Protein Sequence:NP_001078989.1Re-query CCDS DB by Nucleotide ID:NM_001085520Re-query CCDS DB by Protein ID:NP_001078989Link to BLAST:NP_001078989.1

Chromosomal Locations for CCDS 38823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101988116 101988402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101988831 101988981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101989958 101990014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGAGCACCTACAACCCTCCCACACTCCTGCAGCTGGCACTGGACGGGGTGCTGAGGAAGGATTCCATAG
ACTTCTCTGATCTGGAGTACCTGCCCATCACGCTCTTCCCACCACTCTTCATAAAGGCCTTCAATAGCAG
ACACACAGAGATAGTAAAGAAAATGGTGGCAACCTGGCCCTTTCCCTGCCTCCCTGTGGGGACACTGCTT
AAAACCGCTGGTGTGGAGATGCTGCAAGCTGTGCTGGATGGCATAGATATACTGCTGACACAGAATGTTA
GTCTCAGGTGCAAGCTTCAAGTGTTGGAGTTGAGAGATGTACACCAGCATTTCTGGGATGTATGGGCTGG
AAGAGAGGATGAAGTCCACTCAGCAGAGACTAAGAGTGAGAAGAAAGTAGGAGAGCGCATTTCTAGAAAA
CCACCGAGAGGTGTGAAGGAGTACTATGTGCACAGTTATCAAACTGACTGGTCAGTGCAGACCTTCTGTT
TATGA

Translation (164 aa):
MSTYNPPTLLQLALDGVLRKDSIDFSDLEYLPITLFPPLFIKAFNSRHTEIVKKMVATWPFPCLPVGTLL
KTAGVEMLQAVLDGIDILLTQNVSLRCKLQVLELRDVHQHFWDVWAGREDEVHSAETKSEKKVGERISRK
PPRGVKEYYVHSYQTDWSVQTFCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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