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Report for CCDS38829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38829.1 Public Mus musculus 4 Cyb5rl 23 108 98 CCDS HistoryNCBI Gene:230582Re-query CCDS DB by CCDS ID:38829.1Re-query CCDS DB by GeneID:230582See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106756.8 ENSMUSP00000102367.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106756.8Link to Ensembl Protein Viewer:ENSMUSP00000102367.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106756Re-query CCDS DB by Protein ID:ENSMUSP00000102367
Original member NCBI NM_175471.3 NP_780680.1 Updated not alive Link to Nucleotide Sequence:NM_175471.3Link to Protein Sequence:NP_780680.1Re-query CCDS DB by Nucleotide ID:NM_175471Re-query CCDS DB by Protein ID:NP_780680
Current member NCBI NM_175471.4 NP_780680.1 Accepted alive Link to Nucleotide Sequence:NM_175471.4Link to Protein Sequence:NP_780680.1Re-query CCDS DB by Nucleotide ID:NM_175471Re-query CCDS DB by Protein ID:NP_780680Link to BLAST:NP_780680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780680.1 256 B1AS42-3 256 100% 0 0

Chromosomal Locations for CCDS 38829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107070527 107070547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107070870 107071018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107073873 107073960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107077676 107077780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107080891 107081094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107084127 107084330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGAACAATAAAGACCTTGAGAGCTGTTCTGCCAAGCTGAGTCCAGAGACTTTCCTGGCCTTCCACATCA
GCACCATGGAGAAGGTCACCAAGGACACCTATCTTGTCCGGTTTACACTACCCGGGAACAGTCGGCTCGG
CCTGCGTCCTGGACAGCACCTCATCCTACGAGGTGTAGTAGATGGCTTAGAGATTCAGAGAGCCTACACT
CCCATCAGCCCTGTCACTGCAGAAGGATACTTTGACGTTTTAATCAAGTGCTACCGGACTGGGCTGATGT
CCCAGTATGTGGAGTCATGGAGAACAGGAGACACAGCCTTCTGGCGAGGGCCTTTCGGAAGCTTCTTATA
TGAACCAAAGAAGTACGGCGAGCTCCTCATGCTAGCGGCTGGCACAGGCCTGGCCCCCATGGTGCCAATC
CTGCAGAGCATCACAGACGACGAAGATGATGAGACCTTTGTCACCTTGGTCGGCTGCTTCAAGACCTTCG
AGGGCATCTACCTGAAGACCTTCTTCCAGGAACAGGCCAGGTTCTGGAACGTGCAAACCTTCTTTGTCCT
CAGTCAGGAGGTCTCCCCAGAACAGCTTCCCTGGAGCTACCGTGACAAGACCCATTTTGGCCGCCTGGGC
CAGGAGCTGGTTGCTGAACTGGTGGCCTGCTGCCGGAGAAAGCCGTTTACCTTAGTCTGTGGCTCACCTG
CATTTAATGAGGACATGGCTAGGTGTTTGCTGTCTGCTGGCCTGACTGAGGACTCCTACTTCCTCTTCTA
G

Translation (256 aa):
MNNKDLESCSAKLSPETFLAFHISTMEKVTKDTYLVRFTLPGNSRLGLRPGQHLILRGVVDGLEIQRAYT
PISPVTAEGYFDVLIKCYRTGLMSQYVESWRTGDTAFWRGPFGSFLYEPKKYGELLMLAAGTGLAPMVPI
LQSITDDEDDETFVTLVGCFKTFEGIYLKTFFQEQARFWNVQTFFVLSQEVSPEQLPWSYRDKTHFGRLG
QELVAELVACCRRKPFTLVCGSPAFNEDMARCLLSAGLTEDSYFLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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