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Report for CCDS38834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38834.1 Public Mus musculus 4 Zfyve9 23 108 98 CCDS HistoryNCBI Gene:230597Re-query CCDS DB by CCDS ID:38834.1Re-query CCDS DB by GeneID:230597See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042185.7 ENSMUSP00000039852.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042185.7Link to Ensembl Protein Viewer:ENSMUSP00000039852.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042185Re-query CCDS DB by Protein ID:ENSMUSP00000039852
Original member NCBI NM_183300.3 NP_899123.2 Updated not alive Link to Nucleotide Sequence:NM_183300.3Link to Protein Sequence:NP_899123.2Re-query CCDS DB by Nucleotide ID:NM_183300Re-query CCDS DB by Protein ID:NP_899123
Current member NCBI NM_183300.4 NP_899123.2 Accepted alive Link to Nucleotide Sequence:NM_183300.4Link to Protein Sequence:NP_899123.2Re-query CCDS DB by Nucleotide ID:NM_183300Re-query CCDS DB by Protein ID:NP_899123Link to BLAST:NP_899123.2

Chromosomal Locations for CCDS 38834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108639259 108639420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108642088 108642264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108644336 108644441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108650184 108650346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108656927 108657007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108660565 108660715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108674453 108674557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108677710 108677792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108680902 108681126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108682134 108682289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108684909 108685031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108689149 108689269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108691622 108691791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108693320 108693496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108695769 108695868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108723807 108723827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGAATTTGAACAAAATGAAGGTTTTCTGTGCTTCCTGCTGCAGCCTAAAATGCAAACTGCTGTACATGG
ACAGAAAGGAAGCCAGAGTGTGTGTAATCTGTCACTCAGTGCTGATGAATGCTCAAGCCTGGGAGAACAT
GATGAGTGCCTCAAGCCAGAGCCCTAACCCTAACAATCCTGCTGAATACTGTTCTACTATCCCTCCCTTG
CAGCAAGCTCAGGCCTCAGGAGCCCTGAGCTCTCCACCTCCCACTGTGATGGTACCTGTGGGAGTTTTAA
AGCACCCTGGAACAGAAGTGCCTCAGCCCAGAGAGCAGAGGAGAGTTTGGTTTGCTGATGGGATCTTACC
TAATGGAGAAGTTGCTGATGCAGCCAAATTAACAATGAATGGAACTTCCTCTGCAGGAACTCTGGCTGTG
TCACATGACCCAGTCAAGCCTGTAGCCACCAGTCCTCTTCCAACAGAGGCTGATACTTCTCTGTTCTCTG
GGAGCATTACTCAGGTTGGAAGTCCTGTTGGAAGTGCAATGAACCTTATTCCTGAAGATGGCCTTCCTCC
CATCCTCATCTCCACTGGTGTGAAAGGAGATTATGCTGTGGAAGAGAAACCATCACAGATTTCAGTCATG
CAGCAACTGGAGGATGGTGGCCCTGACCCACTTGTCTTTGTTTTAAATGCAAATTTATTGTCAATGGTTA
AAATTGTAAATTATGTGAACAGGAAGTGCTGGTGTTTTACAACCAAAGGGATGCATGCCGTGGGTCAATC
TGAGATAGTTATTCTTCTGCAGTGTCTGCCAGATGAGAAATGTTTGCCTAAGGACATCTTTAATCACTTT
GTACAGCTTTACCGGGACGCCCTGGCAGGGAATGTTGTGGGCAGCCTGGGACATTCTTTCTTCAGTCAAA
GTTTCCTGGGCAGTAAAGAACATGGTGGGTTCTTGTATGTGACATCTACCTACCAGTCACTGCAAGACCT
GGTGCTTCCAACCCCTCCTTACCTGTTTGGGATTCTCATCCAGAAATGGGAAACTCCTTGGGCCAAAGTG
TTTCCCATACGACTCTTGTTAAGACTTGGAGCTGAATATCGACTTTACCCCTGTCCACTGTTCAGTGTCA
GATTTCGGAAGCCATTATTTGGAGAGACTGGCCATACCATCATGAATCTTCTAGCAGACTTCCGAAATTA
CCAGTATACTCTGCCAGTTGTCCAAGGTTTAGTGGTTGATATGGAAGTTCGAAAAACAAGCATCAAAATT
CCCAGCAACAGATATAATGAGATGATGAAAGCCATGAACAAATCCAATGAACATGTACTGGCAGGAGGTG
CCTGCTTCAATGAAAAGGCAGATTCTCATCTTGTGTGTGTACAGAACGATGATGGAAACTATCAAACCCA
GGCCATCAGTATTCACAATCAGCCCAGGAAAGTGACTGGCGCCAGTTTCTTTGTGTTCAGTGGCGCACTG
AAATCCTCTTCAGGATACCTTGCCAAGTCCAGTATTGTAGAAGATGGAGTCATGGTCCAGATCACTGCGG
AGAACATGGACTCCTTGAGGCAGGCACTGCGGGAGATGAAGGACTTTACCATCACTTGTGGGAAGGCGGA
TGCAGAGGACCCCCAGGAACAGATCCACATCCAGTGGGTGGACGATGACAAGACAGTTAACAAAGGTGTG
GTGAGTCCTATAGATGGGAAGTCTATGGAATCTATAACAAACGTGAAAATATTCCATGGGTCAGAGTATA
AAGCAAACGGAAAAGTCATCAGATGGACAGAGGTGTTTTTCCTGGAAAACGATGACCACCATAACTGCCT
GAGTGACCCTGCAGATCACAGCAGACTGACTGAGCATGTCGCCAAGGCATTCTGCCTCGCCCTCTGCCCC
CACCTGAAGCTTTTAAAAGAAGATGGAATGACAAAACTGGGACTCCGTGTGACGCTTGACTCAGATCAGG
TTGGCTATCAAGCAGGGAGCAATGGCCAGCCCCTTCCCTCGCAGTACATGAACGATCTGGACAGTGCCTT
GGTGCCTGTCATTCATGGAGGAGCCTGCCAGCTCAGTGAAGGCCCTGTCGTCATGGAACTCATCTTTTAT
ATTCTGGAAAACATCGCATAG

Translation (706 aa):
MNLNKMKVFCASCCSLKCKLLYMDRKEARVCVICHSVLMNAQAWENMMSASSQSPNPNNPAEYCSTIPPL
QQAQASGALSSPPPTVMVPVGVLKHPGTEVPQPREQRRVWFADGILPNGEVADAAKLTMNGTSSAGTLAV
SHDPVKPVATSPLPTEADTSLFSGSITQVGSPVGSAMNLIPEDGLPPILISTGVKGDYAVEEKPSQISVM
QQLEDGGPDPLVFVLNANLLSMVKIVNYVNRKCWCFTTKGMHAVGQSEIVILLQCLPDEKCLPKDIFNHF
VQLYRDALAGNVVGSLGHSFFSQSFLGSKEHGGFLYVTSTYQSLQDLVLPTPPYLFGILIQKWETPWAKV
FPIRLLLRLGAEYRLYPCPLFSVRFRKPLFGETGHTIMNLLADFRNYQYTLPVVQGLVVDMEVRKTSIKI
PSNRYNEMMKAMNKSNEHVLAGGACFNEKADSHLVCVQNDDGNYQTQAISIHNQPRKVTGASFFVFSGAL
KSSSGYLAKSSIVEDGVMVQITAENMDSLRQALREMKDFTITCGKADAEDPQEQIHIQWVDDDKTVNKGV
VSPIDGKSMESITNVKIFHGSEYKANGKVIRWTEVFFLENDDHHNCLSDPADHSRLTEHVAKAFCLALCP
HLKLLKEDGMTKLGLRVTLDSDQVGYQAGSNGQPLPSQYMNDLDSALVPVIHGGACQLSEGPVVMELIFY
ILENIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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