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Report for CCDS38885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38885.1 Public Mus musculus 4 Fam229a 23 108 98 CCDS HistoryNCBI Gene:68233Re-query CCDS DB by CCDS ID:38885.1Re-query CCDS DB by GeneID:68233See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106043.2 ENSMUSP00000101658.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106043.2Link to Ensembl Protein Viewer:ENSMUSP00000101658.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106043Re-query CCDS DB by Protein ID:ENSMUSP00000101658
Original member Current member NCBI NM_001085491.2 NP_001078960.1 Accepted alive Link to Nucleotide Sequence:NM_001085491.2Link to Protein Sequence:NP_001078960.1Re-query CCDS DB by Nucleotide ID:NM_001085491Re-query CCDS DB by Protein ID:NP_001078960Link to BLAST:NP_001078960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078960.1 128 B2KGE5 128 100% 0 0

Chromosomal Locations for CCDS 38885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129491199 129491335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129491415 129491561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129491692 129491794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGCAGTCCTCCCCTTCGACGCTGGGGCCCGGGCGCGCAGCAGACACCTGCCAGGCTCCGCCTGGACCGG
AGCGTCCTCCCGTGGCCAGGGCTCGGGCAGTTGCTTCCAGCCTGGGACCGGCCTCGGCCTCTGGCAGAGT
GCCCCGGGGCCTGGACATGAGTGCCCAGGAGACCCCACAGGGTCGAAGATTCCCCATTGAGGCCGGAGAC
TCCCCTGGCCTTGCCTCCGCCCCCGAGTCCCAGGATAGCCCGGAGCCTGTAGCTACGGATCAAAACCCTG
TCAGGCCGCTCCGACGCTGCCCGGGCTGCCACTGTCTGACGCTGCTGCACGTGCCCATCGACGTCTACCT
GGCCATGGGCGGGAGCCCCCGGGCCCGTGCTACCTGA

Translation (128 aa):
MQSSPSTLGPGRAADTCQAPPGPERPPVARARAVASSLGPASASGRVPRGLDMSAQETPQGRRFPIEAGD
SPGLASAPESQDSPEPVATDQNPVRPLRRCPGCHCLTLLHVPIDVYLAMGGSPRARAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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