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Report for CCDS3899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3899.1 Public Homo sapiens 5 TARS1 24 110 108 CCDS HistoryNCBI Gene:6897Re-query CCDS DB by CCDS ID:3899.1Re-query CCDS DB by GeneID:6897See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3899.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265112.8 ENSP00000265112.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265112.8Link to Ensembl Protein Viewer:ENSP00000265112.3Re-query CCDS DB by Nucleotide ID:ENST00000265112Re-query CCDS DB by Protein ID:ENSP00000265112
Original member Current member EBI ENST00000502553.5 ENSP00000424387.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502553.5Link to Ensembl Protein Viewer:ENSP00000424387.1Re-query CCDS DB by Nucleotide ID:ENST00000502553Re-query CCDS DB by Protein ID:ENSP00000424387
Original member Current member NCBI NM_001258437.1 NP_001245366.1 Accepted alive Link to Nucleotide Sequence:NM_001258437.1Link to Protein Sequence:NP_001245366.1Re-query CCDS DB by Nucleotide ID:NM_001258437Re-query CCDS DB by Protein ID:NP_001245366Link to BLAST:NP_001245366.1
Original member Current member NCBI NM_152295.5 NP_689508.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152295.5Link to Protein Sequence:NP_689508.3Re-query CCDS DB by Nucleotide ID:NM_152295Re-query CCDS DB by Protein ID:NP_689508Link to BLAST:NP_689508.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245366.1 723 P26639-1 723 100% 0 0
NP_689508.3 723 P26639-1 723 100% 0 0

Chromosomal Locations for CCDS 3899.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33441087 33441143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33445324 33445404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33448541 33448731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33453289 33453412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33454945 33455066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33455587 33455704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33456002 33456066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33456149 33456227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33457257 33457403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33458566 33458664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33459695 33459861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33460902 33461064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33461158 33461295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33461667 33461744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33461906 33462006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33462099 33462203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33463753 33463825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33466871 33466985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33467560 33467708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGTTTGAGGAGAAGGCCAGCAGTCCTTCAGGGAAGATGGGAGGCGAGGAGAAGCCGATTGGTGCTGGTG
AAGAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGGATCTGGAGATGGAGGTCGAGCTGAGTT
GAATCCTTGGCCTGAATATATTTACACACGTCTTGAGATGTATAATATACTAAAAGCAGAACATGATTCC
ATTCTGGCAGAAAAGGCAGAAAAAGATAGCAAGCCAATTAAAGTCACTTTGCCTGATGGTAAACAGGTTG
ATGCGGAATCTTGGAAAACTACACCATATCAAATTGCCTGTGGAATTAGTCAAGGCCTGGCCGACAACAC
CGTTATTGCTAAAGTAAATAATGTTGTGTGGGACCTGGACCGCCCTCTGGAAGAAGATTGTACCTTGGAG
CTTCTCAAGTTTGAGGATGAGGAAGCTCAGGCAGTGTATTGGCACTCTAGTGCTCACATAATGGGTGAAG
CCATGGAAAGAGTCTATGGTGGATGTTTATGCTACGGTCCGCCAATAGAAAATGGATTCTATTATGACAT
GTACCTCGAAGAAGGGGGTGTGTCTAGCAATGATTTCTCTTCTCTGGAGGCTTTGTGTAAGAAAATCATT
AAAGAAAAACAAGCTTTTGAAAGACTGGAAGTTAAGAAAGAAACTTTACTGGCAATGTTTAAGTACAACA
AGTTCAAATGCCGGATATTGAATGAAAAGGTGAATACTCCAACTACCACAGTCTATAGATGTGGCCCTTT
GATAGATCTCTGCCGGGGTCCTCATGTTAGACACACGGGCAAAATTAAGGCTTTAAAAATACACAAAAAT
TCCTCCACGTACTGGGAAGGCAAAGCAGATATGGAGACTCTCCAGAGAATTTATGGCATTTCATTCCCAG
ATCCTAAAATGTTGAAAGAGTGGGAGAAGTTCCAAGAGGAAGCTAAAAACCGAGATCATAGGAAAATTGG
CAGGGACCAAGAACTATATTTCTTTCATGAACTCAGCCCTGGAAGTTGCTTTTTTCTGCCAAAAGGAGCC
TACATTTATAATGCACTTATTGAATTCATTAGGAGCGAATATAGGAAAAGAGGATTCCAGGAGGTAGTCA
CCCCAAACATCTTCAACAGCCGACTCTGGATGACCTCGGGCCACTGGCAGCACTACAGCGAGAACATGTT
CTCCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATGAACTGCCCAGGACACTGCCTTATGTTT
GATCATCGGCCAAGGTCCTGGCGAGAACTGCCTCTGCGGCTAGCTGATTTTGGGGTACTTCATAGGAACG
AGCTGTCTGGAGCACTCACAGGACTCACCCGGGTACGAAGATTCCAACAGGATGATGCTCACATATTCTG
TGCCATGGAGCAGATTGAAGATGAAATAAAAGGTTGTTTGGATTTTCTACGTACGGTATATAGCGTATTT
GGATTTTCTTTTAAACTAAACCTTTCTACTCGCCCGGAAAAATTCCTTGGAGATATCGAAGTATGGGATC
AAGCTGAGAAACAACTTGAAAACAGTCTGAATGAATTTGGTGAAAAGTGGGAGTTAAACTCTGGAGATGG
AGCTTTCTATGGCCCAAAGATTGACATACAGATTAAAGATGCGATTGGGCGGTACCACCAGTGTGCAACC
ATCCAGCTGGATTTCCAGTTGCCCATCAGATTTAATCTTACTTATGTAAGCCATGATGGTGATGATAAGA
AAAGGCCAGTGATTGTTCATCGAGCCATCTTGGGATCAGTGGAAAGAATGATTGCTATCCTCACAGAAAA
CTATGGGGGCAAATGGCCCTTTTGGCTGTCCCCTCGCCAGGTAATGGTAGTTCCAGTGGGACCAACCTGT
GATGAATATGCCCAAAAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGACATTGATCTGGATC
CAGGCTGTACATTGAATAAAAAGATTCGAAATGCACAGTTAGCACAGTATAACTTCATTTTAGTTGTTGG
TGAAAAAGAGAAAATCAGTGGCACTGTTAATATCCGCACAAGAGACAATAAGGTCCACGGGGAACGCACC
ATTTCTGAAACTATCGAGCGGCTACAGCAGCTCAAAGAGTTCCGCAGCAAACAGGCAGAAGAAGAATTTT
AA

Translation (723 aa):
MFEEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEMYNILKAEHDS
ILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLE
LLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKII
KEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKN
SSTYWEGKADMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGA
YIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMF
DHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVF
GFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCAT
IQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTC
DEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERT
ISETIERLQQLKEFRSKQAEEEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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