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Report for CCDS39008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39008.1 Public Mus musculus 5 Steap4 23 108 98 CCDS HistoryNCBI Gene:117167Re-query CCDS DB by CCDS ID:39008.1Re-query CCDS DB by GeneID:117167See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115421.2 ENSMUSP00000111081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115421.2Link to Ensembl Protein Viewer:ENSMUSP00000111081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115421Re-query CCDS DB by Protein ID:ENSMUSP00000111081
Original member NCBI NM_054098.3 NP_473439.2 Updated not alive Link to Nucleotide Sequence:NM_054098.3Link to Protein Sequence:NP_473439.2Re-query CCDS DB by Nucleotide ID:NM_054098Re-query CCDS DB by Protein ID:NP_473439
Current member NCBI NM_054098.4 NP_473439.2 Accepted alive Link to Nucleotide Sequence:NM_054098.4Link to Protein Sequence:NP_473439.2Re-query CCDS DB by Nucleotide ID:NM_054098Re-query CCDS DB by Protein ID:NP_473439Link to BLAST:NP_473439.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473439.2 470 Q923B6 470 100% 0 0

Chromosomal Locations for CCDS 39008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 7975441 7975896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 7976495 7977022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 7978408 7978572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 7980295 7980558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGAGAAAGCACATGCAGATGAGTTTCCTCTGACTACTGATTCCTCAGAAAAGCAAGGGGTTGTCTGCA
TTTTCGGAACAGGAGATTTCGGGAAGTCACTGGGATTGAAAATGCTTCAGTGTGGCTATTCTATCGTTTT
TGGGAGTCGAAACCCCCAGGTGTCCAGCCTTCTGCCCAGGGGGGCAGAGGTCCTGAGCTATTCGGAAGCA
GCATCCAAGTCTGACATCATAATCCTAGCCATGCACAGAGAGCACTATGATTCCCTCACGGAACTAGTTG
ATTATCTCAAAGGAAAAGTATTGGTAGACGTCAGTAACAACCGCAAAATCAATCAGTATCCAGAGTCAAA
TGCGGAATACCTTGCTCAGCTGGAGCCAGGAGCCCACGTGGTCAAAGCATTTAACACCATCTCAGCCTGG
GCTCTCCAGTCAGGAACACTAGATGCAAGCCGGCAGGTGTTTGTCTGTGGAAATGACAGCAAGGCCAAAC
AAAGAGTAATGGACATTGCTCGTACTCTTGGGCTCACCCCACTGGACCAAGGATCTCTCATGGCAGCCAG
TGAAATTGAAAACTACCCTCTGCAACTATTTCCAATGTGGAGGTTTCCTTTCTATTTGTCCTCTGTGCTG
TGCGTCTTCTTCTTTGTGTACTGTGCAATACGAGAGGTGATATACCCCTACGTGAATGGGAAAACAGATG
CTACGTACCGCCTGGCCATTTCCATCCCGAATCGTGTCTTTCCTATAACAGCACTGATCCTGCTTGCCTT
GGTGTACCTCCCTGGTATTCTCGCTGCCATTCTGCAGCTCTATCGAGGCACAAAGTACCGCCGATTCCCA
AACTGGCTTGACCATTGGATGCTTTGCAGAAAGCAACTGGGCTTGGTAGCTCTGGGATTTGCCTTCCTTC
ATGTCATCTACACACTTGTGATTCCTATCCGTTACTATGTTCGATGGAGGCTGAGAAATGCAACCATTAC
TCAGGCCCTAACTAATAAAGACAGCCCATTTATTACCTCTTATGCCTGGATTAATGATTCCTACTTGGCG
CTGGGAATCCTGGGATTTTTTCTGTTCCTTCTGTTGGGAATCACTTCCTTGCCATCAGTAAGCAACATGG
TCAACTGGAGAGAGTTCCGGTTTGTTCAGTCCAAACTGGGTTATCTGACCCTGGTCTTGTGCACAGCCCA
CACTTTGGTGTATGGCGGAAAGAGATTCCTCAGCCCTTCGATTCTAAGGTGGAGCCTCCCTTCGGCTTAT
ATTTTGGCACTCGTCATCCCCTGCGCAGTGCTGGTGCTGAAGTGCATCCTCATCATGCCATGCATAGACA
AGACCCTCACTCGCATCCGCCAGGGCTGGGAAAGAAACTCAAAGTACACACAATCAGCACTGAACGGAAA
ATCGGATATTTAA

Translation (470 aa):
MEKAHADEFPLTTDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSIVFGSRNPQVSSLLPRGAEVLSYSEA
ASKSDIIILAMHREHYDSLTELVDYLKGKVLVDVSNNRKINQYPESNAEYLAQLEPGAHVVKAFNTISAW
ALQSGTLDASRQVFVCGNDSKAKQRVMDIARTLGLTPLDQGSLMAASEIENYPLQLFPMWRFPFYLSSVL
CVFFFVYCAIREVIYPYVNGKTDATYRLAISIPNRVFPITALILLALVYLPGILAAILQLYRGTKYRRFP
NWLDHWMLCRKQLGLVALGFAFLHVIYTLVIPIRYYVRWRLRNATITQALTNKDSPFITSYAWINDSYLA
LGILGFFLFLLLGITSLPSVSNMVNWREFRFVQSKLGYLTLVLCTAHTLVYGGKRFLSPSILRWSLPSAY
ILALVIPCAVLVLKCILIMPCIDKTLTRIRQGWERNSKYTQSALNGKSDI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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