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Report for CCDS39027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39027.1 Public Mus musculus 5 Atg9b 23 108 98 CCDS HistoryNCBI Gene:213948Re-query CCDS DB by CCDS ID:39027.1Re-query CCDS DB by GeneID:213948See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059401.6 ENSMUSP00000051864.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059401.6Link to Ensembl Protein Viewer:ENSMUSP00000051864.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059401Re-query CCDS DB by Protein ID:ENSMUSP00000051864
Original member Current member NCBI NM_001002897.3 NP_001002897.2 Accepted alive Link to Nucleotide Sequence:NM_001002897.3Link to Protein Sequence:NP_001002897.2Re-query CCDS DB by Nucleotide ID:NM_001002897Re-query CCDS DB by Protein ID:NP_001002897Link to BLAST:NP_001002897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002897.2 922 Q6EBV9 922 100% 0 0

Chromosomal Locations for CCDS 39027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24385239 24385363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24385446 24385569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24385753 24385849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24386008 24386141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24386310 24386546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24386948 24387127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24387387 24387543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24387689 24388443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24389781 24389922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24390462 24390623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24391017 24391081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24391204 24391247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24391370 24391916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGGTGAGACGAACGGGGTGGGGGGGGAGCAGGAGGCAACGGGGGCGGTGGGGAGACTTGGGGCCCAGCT
CAGTGCCTCTGCTCCCTATGGCACTGCCACTGCCTGCTTCTCCATGCCGGGGAACTGGGGGAAGGAGGAT
CTCTGTCTTCTCTCTGTCCCCTGCCCCTCGCACAAGAAGCTGCTCCTCTTCAGTGTTCCCTCCGGCCTCA
GGGTCTCCCTGCCTGGTGATTCAGGAGGCAGGGGCTTCTCAGACTCCACACAATGTCTTACCCACCCCGA
CCACACCCTCAACGCAGGCCCATCCCACAATGATACACACCTCTGCTTCCCCCTCGTGGGGGTCCCACTC
CACCCCACCCCTGGCCTCGGCCACTCCCCCTCCCTCCTGCCCGCGCCCCCAGGACCATCCTGGGCTGCGG
ATGGGCCCTCTGATCCCTGAGCAGGACTATGAACGGCTAGAGGACTGTGACCCTGAGGGGTCTCAAGACT
CCCCTATCCATGGGGAGGACCACCAACCCTTGCTTCATGTACCCGAAGGACTCCGCGGTTCCTGGCATCA
CATCCAGAACCTGGACAGTTTTTTCACCAAGATCTACAGCTATCATCAGCGGAATGGCTTTGCCTGTATC
CTGCTGGAGGATGTCTTCCAGCTGGGGCAGTTCATTTTCATTGTCACCTTTACAACCTTCCTCCTTCGCT
GCGTGGATTACAATGTTCTCTTCAACAACCAACCAAAGAACCATACAAGACGTGGACCATTACACAGCAA
AGTGACCTTGTCAGATGCCATTCTACCCTCGGCCCAGTGTGCAGAGAAGATCCACGACAGTCCCCTGTTG
GTCTTCCTCCTAGTCCTGGCTGCTGGCTTCTGGCTGTTCCAGCTGCTTCGCTCGGTCTGCAACCTCTTCA
GCTACTGGGACATCCAGGTGTTTTACAGGGAGGCCCTGCACATTCCCCCAGAGGAGCTCAGCTCGGTACC
CTGGGCCGAGGTGCAGTCTCGCCTCCTGGAACTGCAGAGGAGCGGTGGGCTGTGTGTGCAGCCGCGGCCG
CTGACGGAACTGGACGTCCACCACCGCATCCTGCGCTACACCAACTACCAGGTAGCGTTAGCCAACAAGG
GTCTGCTGCCTGCCCGCTGCCCGCTGCCCTGGGGGAGCAGCGCCGCCTTCCTCAGCCGCGGCCTGGCGCT
CAACGTGGACTTGCTGCTCTTCCGCGGTCCCTTCTCACTCTTCCGCGGGGGCTGGGAGCTTCCCGAAGCC
TACAAGCGCAGCGACCTCCGGGGCGTCCTGGCTAACCGCTGGCGGCGCACGGTGCTGCTGCTGGCCGCCG
TGAACTTGGCCCTGAGCCCGCTGGTGCTGGCCTGGCAGGTATTGCACGCCTTCTACAGCCACGTGGAGCT
GCTGCGGCGCGAGCCCGGAGCCTTCGGGGCGCGCCGCTGGTCCCGCCTGGCCCGCCTGCAGCTTCGCCAC
TTTAACGAGCTGCCGCACGAGCTGCGTGCGCGCCTGGGCCGCGCCTACCGGCCCGCCGCCGCCTTCCTGC
GTGCAGCGGAGCCCCCAGCTCCCCTGCGCGCGCTGCTGGCCCGCCAGCTGGTCTTCTTCTCGGGAGCTCT
CTTTGCCGCGCTGCTAGTGCTCACCATCTACGATGAGGACGTGTTGGCCGTGGAGCATGTGCTCACTACC
ATGACGGCGCTCGGGGTCACAGCCACTGTGGCCAGGTCCTTCATTCCAGAAGAGCAATGCCAGGGGCGTT
CCTCCCAGCTTCTGCTGCAGGCAGCCCTGGCGCACATGCATTACCTCCCAGAGGAGCCTGGTGCAACGGG
TGCTCGAGCCAGCTCTTACTGGCAGATGGCGCAGCTGCTTCAGTACCGAGCAGTCTCCCTCCTGGAAGAG
CTCCTGTCTCCACTCCTGACCCCATTGTTTCTGCTCTTCTGGTTCCGCCCCCGTGCTCTGGAGATTATTG
ACTTTTTTCATCACTTCACTGTGGATGTGGCTGGTGTAGGGGACATCTGTTCTTTTGCATTAATGGATGT
GAAGCGCCACGGGCATCCTCAGTGGCTTTCAGAGGGACAGACAGAGGCCTCACTCTCTCAGCGTGCAGAG
GATGGAAAGACCGAACTCTCCTTAATGCGGTTCTCCCTGGCACACCCACAATGGCAGCCACCAGGGCACA
GCTCTAAGTTCCTTGGACACCTTCGGGGCCGGGTACAACAAGATGCAGCTGCCTGGGGTGCTCCCTCGAC
TCGGAGTCCCCCCACCCCAGGAGTGCTCAGTGACTGTACATCCCCTCTGCCAGAAGCCTTCCTTGCCAAC
CTCTTGGTAAATCCCCGCCCACCCCAGAGGGACCTGAGTCCCACAGCCCCCTGCCCTGCTGCAGCCACAG
CCAGCCTCCTTGCCTCTATTTCACGAATGGTCCAGGACCCCAGCTGTGTGTCCCCAGGAGGCACAGGGGG
CCAGAAGCTGACCCAGCTCCCAGAGCTTGTCTCTGCTGAGATGAGCCTCCACGCTATTTACCTACATCAG
CTTCATCAACAGCAGCAGCAAGAACTATGGGGAGAGGCTTCAGCTTCCTCCCCATCCAGGCCCTGGTCCA
GCCCTTCACAGCCAGGCTCACCTGATGAGGAGAAGCCATCTTGGTCAAGTGATGGCTCCAGTCCTGCTTC
TAGCCCAAGACAACAGTGGGGCACCCAGAGGGCCCAGAATCTGTTCCCAAAGGGGTTTCAGGAGAACACA
GACACCCAGAAGGAGCCCCTAACAGGCCCCTTGCACTGA

Translation (922 aa):
MVRRTGWGGSRRQRGRWGDLGPSSVPLLPMALPLPASPCRGTGGRRISVFSLSPAPRTRSCSSSVFPPAS
GSPCLVIQEAGASQTPHNVLPTPTTPSTQAHPTMIHTSASPSWGSHSTPPLASATPPPSCPRPQDHPGLR
MGPLIPEQDYERLEDCDPEGSQDSPIHGEDHQPLLHVPEGLRGSWHHIQNLDSFFTKIYSYHQRNGFACI
LLEDVFQLGQFIFIVTFTTFLLRCVDYNVLFNNQPKNHTRRGPLHSKVTLSDAILPSAQCAEKIHDSPLL
VFLLVLAAGFWLFQLLRSVCNLFSYWDIQVFYREALHIPPEELSSVPWAEVQSRLLELQRSGGLCVQPRP
LTELDVHHRILRYTNYQVALANKGLLPARCPLPWGSSAAFLSRGLALNVDLLLFRGPFSLFRGGWELPEA
YKRSDLRGVLANRWRRTVLLLAAVNLALSPLVLAWQVLHAFYSHVELLRREPGAFGARRWSRLARLQLRH
FNELPHELRARLGRAYRPAAAFLRAAEPPAPLRALLARQLVFFSGALFAALLVLTIYDEDVLAVEHVLTT
MTALGVTATVARSFIPEEQCQGRSSQLLLQAALAHMHYLPEEPGATGARASSYWQMAQLLQYRAVSLLEE
LLSPLLTPLFLLFWFRPRALEIIDFFHHFTVDVAGVGDICSFALMDVKRHGHPQWLSEGQTEASLSQRAE
DGKTELSLMRFSLAHPQWQPPGHSSKFLGHLRGRVQQDAAAWGAPSTRSPPTPGVLSDCTSPLPEAFLAN
LLVNPRPPQRDLSPTAPCPAAATASLLASISRMVQDPSCVSPGGTGGQKLTQLPELVSAEMSLHAIYLHQ
LHQQQQQELWGEASASSPSRPWSSPSQPGSPDEEKPSWSSDGSSPASSPRQQWGTQRAQNLFPKGFQENT
DTQKEPLTGPLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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