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Report for CCDS39069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39069.1 Public Mus musculus 5 Add1 23 108 98 CCDS HistoryNCBI Gene:11518Re-query CCDS DB by CCDS ID:39069.1Re-query CCDS DB by GeneID:11518See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114338.8 ENSMUSP00000109977.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114338.8Link to Ensembl Protein Viewer:ENSMUSP00000109977.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114338Re-query CCDS DB by Protein ID:ENSMUSP00000109977
Original member Current member NCBI NM_013457.4 NP_038485.1 Accepted alive Link to Nucleotide Sequence:NM_013457.4Link to Protein Sequence:NP_038485.1Re-query CCDS DB by Nucleotide ID:NM_013457Re-query CCDS DB by Protein ID:NP_038485Link to BLAST:NP_038485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038485.1 632 Q9QYC0-2 632 100% 0 0

Chromosomal Locations for CCDS 39069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34601344 34601538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34604690 34604852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34605828 34605979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34610192 34610272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34610490 34610639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34613288 34613431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34613519 34613617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34614184 34614360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34616563 34616814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34619350 34619451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34620045 34620134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34625279 34625435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34628415 34628513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34629136 34629172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34630470 34630470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGAATGGTGACACTCGGGCCGCAGTGGTGACCTCACCACCTCCAACCACAGCCCCTCACAAGGAGAGGT
ATTTTGACAGAGTCGATGAGAACAACCCAGAATATTTGCGGGAGAGGAACATGGCACCAGACCTTCGTCA
GGACTTCAATATGATGGAGCAGAAGAAGAGGGTGTCTATGATTCTACAGAGTCCTGCCTTCTGTGAAGAG
CTGGAGTCTATGATACAGGAACAGTTTAAGAAGGGCAAGAACCCCACAGGCCTGCTGGCATTGCAGCAGA
TTGCAGATTTCATGACTGCGAGTGTACCAAATGTCTACCCGGCAGCTCCTCAAGGAGGAATGGCCGCCCT
GAACATGAGTCTTGGTATGGTCACTCCTGTGAATGACCTTAGAGGGTCGGATTCTATCGCATATGACAAA
GGGGAGAAGTTACTGCGGTGTAAACTGGCAGCATTTTACAGACTGGCAGATCTCTTTGGCTGGTCCCAGC
TTATCTACAATCATATCACAACCAGAGTGAACTCTGAGCAGGAACACTTCCTCATCGTACCTTTTGGACT
TCTCTACAGTGAAGTGACTGCATCCAGCTTGGTTAAGGTCAATCTACAAGGAGATATAGTAGACCGTGGA
AGTACTAACCTAGGGGTGAATCAGGCGGGCTTCACTCTGCACTCGGCAGTGTATGCTGCGCGACCAGATG
CCAAGTGTATTGTGCACATCCACACCCCAGCGGGGGCAGCGGTCTCTGCGATGAAGTGTGGACTCTTGCC
TATCTCCCCGGAGGCACTTTCCCTTGGAGATGTTGCTTATCATGACTATCATGGCATTCTGGTTGATGAA
GAGGAAAAAATTTTGATTCAGAAAAATCTGGGCCCTAAAAGCAAGGTCCTCATTCTGCGGAATCACGGAC
TCGTGTCAGTTGGAGAGAGCGTGGAGGAGGCCTTCTATTACATCCATAACCTTGTGGTTGCATGTGAGAT
CCAGGTTCGGACTCTGGCAAGTGCTGGAGGACCAGACAACTTAGTTCTGCTGGATCCTGGGAAGTACAAA
GCCAAATCCCGTTCTCCAGGGACTCCAGCAGGGGAAGGCTCTGGATCACCTCCCAAGTGGCAGATTGGGG
AGCAGGAATTTGAAGCTCTTATGCGGATGCTCGATAATCTGGGCTACAGAACTGGCTACCCTTATCGATA
CCCTGCTCTGAGAGAGAGATCTAAAAAGTACAGCGATGTGGAAGTCCCTGCCAGTGTCACAGGCCACTCC
TTTGCTAGTGATGGCGATTCGGGCACTTGCTCGCCGCTCAGGCACAGTTTTCAGAAGCAGCAGCGAGAGA
AGACAAGATGGCTGCACTCTGGCCGGGGTGATGACGCTTCTGAGGAGGGGCAGAACGGAAGCAGTCCCAA
GTCGAAGACTAAGTGGACTAAAGAGGATGGACATAGAACTTCCACCTCTGCTGTCCCTAACCTGTTTGTT
CCATTGAACACTAACCCAAAAGAGGTCCAGGAGATGAGGAACAAGATTCGAGAGCAGAACTTACAGGACA
TTAAGACGGCAGGACCTCAGTCCCAGGTTTTGTGTGGTGTGATGATGGACAGAAGCCTTGTTCAGGGGGA
GCTGGTGACGGCCTCCAAAGCCATCATTGAGAAGGAATACCAGCCCCATGTAATTGTGAGCACCACAGGT
CCCAACCCCTTCAACACGCTGACAGACCGTGAACTGGAAGAATACCGACGAGAGGTGGAGCGGAAGCAGA
AGGGCTCTGAAGAGAACCTGGATGAGACAAGAGAGCAGAAAGAGAAGAGTCCTCCAGACCAGTCAGCTGT
CCCCAACACTCCTCCCAGTACTCCTGTCAAGCTTGAAGAAGCAGGAGACGGATGTGCTAAAGAGTACCTG
TTACCCTAA

Translation (632 aa):
MNGDTRAAVVTSPPPTTAPHKERYFDRVDENNPEYLRERNMAPDLRQDFNMMEQKKRVSMILQSPAFCEE
LESMIQEQFKKGKNPTGLLALQQIADFMTASVPNVYPAAPQGGMAALNMSLGMVTPVNDLRGSDSIAYDK
GEKLLRCKLAAFYRLADLFGWSQLIYNHITTRVNSEQEHFLIVPFGLLYSEVTASSLVKVNLQGDIVDRG
STNLGVNQAGFTLHSAVYAARPDAKCIVHIHTPAGAAVSAMKCGLLPISPEALSLGDVAYHDYHGILVDE
EEKILIQKNLGPKSKVLILRNHGLVSVGESVEEAFYYIHNLVVACEIQVRTLASAGGPDNLVLLDPGKYK
AKSRSPGTPAGEGSGSPPKWQIGEQEFEALMRMLDNLGYRTGYPYRYPALRERSKKYSDVEVPASVTGHS
FASDGDSGTCSPLRHSFQKQQREKTRWLHSGRGDDASEEGQNGSSPKSKTKWTKEDGHRTSTSAVPNLFV
PLNTNPKEVQEMRNKIREQNLQDIKTAGPQSQVLCGVMMDRSLVQGELVTASKAIIEKEYQPHVIVSTTG
PNPFNTLTDRELEEYRREVERKQKGSEENLDETREQKEKSPPDQSAVPNTPPSTPVKLEEAGDGCAKEYL
LP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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