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Report for CCDS39151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39151.1 Public Mus musculus 5 Ppef2 23 108 98 CCDS HistoryNCBI Gene:19023Re-query CCDS DB by CCDS ID:39151.1Re-query CCDS DB by GeneID:19023See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031359.8 ENSMUSP00000031359.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031359.8Link to Ensembl Protein Viewer:ENSMUSP00000031359.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031359Re-query CCDS DB by Protein ID:ENSMUSP00000031359
Original member Current member EBI ENSMUST00000201130.3 ENSMUSP00000144157.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201130.3Link to Ensembl Protein Viewer:ENSMUSP00000144157.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201130Re-query CCDS DB by Protein ID:ENSMUSP00000144157
Original member NCBI NM_011148.4 NP_035278.1 Updated not alive Link to Nucleotide Sequence:NM_011148.4Link to Protein Sequence:NP_035278.1Re-query CCDS DB by Nucleotide ID:NM_011148Re-query CCDS DB by Protein ID:NP_035278
Current member NCBI NM_011148.5 NP_035278.1 Accepted alive Link to Nucleotide Sequence:NM_011148.5Link to Protein Sequence:NP_035278.1Re-query CCDS DB by Nucleotide ID:NM_011148Re-query CCDS DB by Protein ID:NP_035278Link to BLAST:NP_035278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035278.1 757 O35385 757 100% 0 0

Chromosomal Locations for CCDS 39151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92226974 92227227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92228647 92228734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92230403 92230566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92231720 92231826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92234174 92234316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92235732 92235917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92238745 92239143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92244604 92244753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92244829 92244865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92245383 92245549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92246735 92246781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92247758 92247872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92249098 92249273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92250289 92250346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92250475 92250602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92253105 92253159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGGAAGCAGCTCATCCACCCAGCACCACTTTGCGTTTCAGAACGCTGAGAAAGCCTTCAAGGCAGCGG
CC
CTGATCCAGAGATGGTACCGGCGCTACATGGCCCGCCTAGAGATGAGGAGGCGATGTACCTGGAACAT
C
TTCCAGTCTATAGAGTATGCTGGACAGCAAGACCAGGTCAAGCTCCATGAATTCTTCAGCTACCTTGTG
GAC
CATTTCACTCCCAGCAGCCACCATGAGAGAGATTTCCTGAACCGCATGTTCACCGAAGAGAGATTCG
CC
CAGGACGTGGAGACAGAGGAGGGTGGAGATTTTGAATCCATAGAGGTGCCAGACAGCTACACGGGGCC
A
CGCCTCTCCTTCCCCCTTCTTCCTGACCATGCCACTGCCCTGGTGGAAGCTTTCAGGCTGCGACAACAG
CTC
CATGCTCGATACGTCTTGAATCTTCTGTACGAGACCAGAAAACACCTGGCCCAGCTGCCCAACATCA
AC
CGAGTCTCCACCTGCTACAGCGAGGAGGTCACAGTGTGTGGAGATCTACATGGCCAGTTGGATGATTT
A
ATATTTATATTTTATAAGAACGGTCTACCATCACCAGAGAGAGCATACGTGTTCAATGGTGACTTTGTG
GAT
CGAGGCAAGGACTCTGTAGAGGTCCTGATGGTTCTCTTTGCCTTCATGTTGGTATACCCCAAGGAGT
TC
CATCTTAACAGAGGAAACCATGAGGACCATCTAGTGAACCTACGATATGGCTTCACCAAGGAAGTGAT
G
CATAAATACAAGATACATGGGAAGAAAATCCTAAGGACACTTCAGGATGTCTTCTGCTGGCTTCCGTTG
GCC
ACTCTGGTTGATGAGAAAGTCCTTGTTCTTCATGGTGGAGTCTCAGACAAGACAGACCTGGAACTTC
TG
GCTAAACTAGACAGGCACAAGATTGTTTCTACCATGAGGTGCAAAACAAGAAAGGAAAGTGAGAATCG
A
GAGGAGCAGAAGAGAAAAGATAACCAGACAAGCTCTGGACAGAAACCTACTCCGTGGTTTCTTCCTCAA
AGC
CGCTCTCTGCCCTCTTCGCCTTTTCACCTGGGCTCTGGCTTTAAGGCCTACAAAGCCGGCAGGTCCT
GC
AGCATCCCCTGTGGCTCCCCTAACAGCAAGGAGCTATCCCGGCGGGGGCAGGTGCGGCGCTCAGTGGA
C
CTGGAACTGGAACAGTGCCGGCAGCAAGCCGGCTTCCTGGGGATCAGAGAGAAGGGGGAGTCCTTGCCT
TTG
GCCCCAGATGCTGACTGTGTTGCTGATGGGGGAGGGGTGCTGGAACCCACCCCCGAGGAGTGGAAGC
AG
GTTGTAGATATTCTGTGGAGTGATCCCGCGGCTCAGGAGGGCTGCAAGGCCAACGCTGTCCGAGGAGG
A
GGCTGTTACTTTGGGCCTGACGTGACAGAACGGTTGATGGAAAAATACAAGCTGCAACTCCTGATCCGT
TCG
CATGAGTGCAAACCCGAGGGCTATGAGTTCTGTCACAACCGCAAGGTGTTAACCATCTTTTCTGCCT
CC
AACTACTATGAAGTTGGCAGCAACAGAGGAGCCTACGTCAAGCTGGGGCCAGCCCTGACTCCACATAT
C
GTGCAGTATCAAGCTAACAAGGCGACCCACAGGCTAACCATGAGGCAAAGGATCAGCAGGGTGGAGGAG
TCG
GCCCTCAGAGCCCTTCGACAGAAATTATTTGCTCATTCGTCGGACCTGCTTGTTGAGTTTAGGAAGC
GC
GACCCGGATGAGAGCGGTGTCATCACCCTGAGTGATTGGGCGACTGCCGTGGAGTCTGTGCTGCACCT
G
GGACTGCCCTGGCGGATGCTGCGGCCACAACTGGTGAATAGTTCAGCGGATAACGTGTTGGAATACAGG
TCC
TGGTTGGACAGTTTGGCCAAAGAACAGCTGAGCCGAGAGAATATTCAGTCGAGTTTGCTGGAAAAGC
TC
TATCGAAACCGATCCAACTTGGAGACCATTTTTAGGATCATAGACAGCGATCATTCAGGATTCATCTC
C
CTGGATGAGTTCAGGCAGACTTGGAAGCTCTTCAGCTCACATATGAGCATCGACATCACAGATGACGGC
ATC
TGTGACCTCGCCAGAAGCATCGACTTCAACAAGGATGGCCACATCGACATCAATGAGTTCCTGGAGG
CC
TTCCGCCTCGTGGAGCAGTCCTGCTTAGAGGGCCACGCCTCTGCTTGCCTGCAGTCCACAGACACTGC
T
GAGAGTGGCCATAGCAGTCCAGGCCCATGCTGA


Translation (757 aa):
MGSSSSTQHHFAFQNAEKAFKAAALIQRWYRRYMARLEMRRRCTWNIFQSIEYAGQQDQVKLHEFFSYLV
D
HFTPSSHHE
RDFLNRMFTEERFAQDVETEEGGDFESIEVPDSYTGPRLSFPLLPDHATALVEAFRLRQQ
L
HARYVLNLLYETRKHLAQLPNINRVSTCYSEEVTVC
GDLHGQLDDLIFIFYKNGLPSPERAYVFNGDFV
D
RGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNL
RYGFTKEVMHKYKIHGKKILRTLQDVFCWLPL
A
TLVDEKVLVLHGGVSDKTDLELLAKLDRHK
IVSTMRCKTRKESENREEQKRKDNQTSSGQKPTPWFLPQ
S
RSLPSSPFHLGSGFKAYKAGRSCSIPCGSPNSKELSRRGQVRRSVDLELEQCRQQAGFLGIREKGESLP
L
APDADCVADGGGVLEPTPEEWKQ
VVDILWSDPAAQEGCKANAVRGGGCYFGPDVTERLMEKYKLQLLIR
S
HECKPEGYEFCHNRK
VLTIFSASNYYEVGSNRGAYVKLGPALTPHIVQYQANKATHRLTMRQRISRVEE
S
ALRALRQKLFAHSSDLLVEFRKRDPDES
GVITLSDWATAVESVLHLGLPWRMLRPQLVNSSADNVLEYR
S
WLDSLAKEQLSRE
NIQSSLLEKLYRNRSNLETIFRIIDSDHSGFISLDEFRQTWKLFSSHMSIDITDDG
I
CDLARSIDFNKDGHIDINEFLEAFRLVEQSCLEGHASACLQSTDTAESGHSSPGPC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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