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Report for CCDS39199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39199.1 Public Mus musculus 5 Rpl5 23 108 98 CCDS HistoryNCBI Gene:100503670Re-query CCDS DB by CCDS ID:39199.1Re-query CCDS DB by GeneID:100503670See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082223.12 ENSMUSP00000080854.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082223.12Link to Ensembl Protein Viewer:ENSMUSP00000080854.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082223Re-query CCDS DB by Protein ID:ENSMUSP00000080854
Original member Current member NCBI NM_016980.2 NP_058676.1 Accepted alive Link to Nucleotide Sequence:NM_016980.2Link to Protein Sequence:NP_058676.1Re-query CCDS DB by Nucleotide ID:NM_016980Re-query CCDS DB by Protein ID:NP_058676Link to BLAST:NP_058676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058676.1 297 P47962 297 100% 0 0

Chromosomal Locations for CCDS 39199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107900644 107900646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107901870 107901939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107902022 107902137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107903269 107903403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107903666 107903868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107904717 107904894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107907189 107907277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107907897 107907996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGGGTTTGTGAAAGTTGTCAAGAATAAGGCCTACTTTAAAAGATACCAAGTGAGATTTCGAAGGCGGC
GAGAGGGTAAAACTGACTACTATGCTCGAAAACGATTGGTGATCCAGGACAAGAATAAGTACAACACACC
CAAATATAGGATGATAGTTCGTGTAACTAACAGAGATATCATCTGCCAGATTGCATATGCCCGTATAGAA
GGGGATATGATCGTCTGTGCAGCATATGCACATGAACTTCCAAAATATGGTGTGAAAGTTGGCCTGACAA
ATTATGCTGCAGCCTATTGCACTGGCCTGCTGCTGGCCCGCAGGCTTCTGAATAGGTTTGGCATGGACAA
GATCTATGAAGGCCAAGTGGAGGTGAATGGAGGTGAATACAATGTGGAAAGCATTGACGGTCAGCCTGGT
GCCTTCACTTGCTATCTGGATGCAGGTCTTGCCCGAACTACAACTGGCAATAAAGTTTTTGGGGCCCTGA
AGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCATAGTACCAAACGATTCCCTGGTTATGACTCTGAAAG
CAAGGAGTTCAATGCAGAGGTACATCGGAAGCACATCATGGGTCAGAATGTGGCAGACTACATGCGCTAC
CTAATGGAGGAAGATGAAGATGCGTATAAGAAACAGTTCTCTCAGTACATCAAGAACAACGTAACTCCAG
ACATGATGGAGGAGATGTATAAGAAAGCTCATGCTGCTATCCGAGAGAATCCAGTCTATGAGAAGAAGCC
CAAGAGAGAAGTGAAGAAGAAGAGGTGGAATCGTCCCAAAATGTCTCTTGCCCAGAAGAAAGATCGGGTT
GCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAAAGGGCTGCTGAAAGCTAA

Translation (297 aa):
MGFVKVVKNKAYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE
GDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPG
AFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRY
LMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRV
AQKKASFLRAQERAAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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